Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6222 |
Symbol | |
ID | 7975438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 952939 |
End bp | 953679 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644796792 |
Product | nitroreductase |
Protein accession | YP_002948051 |
Protein GI | 239820866 |
COG category | [C] Energy production and conversion |
COG ID | [COG0778] Nitroreductase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCGAA TGATGGCGCC GCCGCTGGAC GCGCAGGCAC TGCAAGGCGC AGTCGACTGG GCGATTGCCA CGCGGCGCAG CATCAGGGCC TACTTGCCCA GGCCGGTGCC ACAGCAAGAG ATCGAAGCGA TTCTCTCGAC CGCGCGCTAC AGCGCTTCCG GCATGAACAT GCAGCCCTGG CATGTGCACG TGCTGACCGG GCCCGCGAAG GCCGGCCTGT CCGCTGCGAT CGCGGCGCTC GACGACGATC CCGCCAGATC GGGAGAACTG CTCGAGCCCT ACGACTACTA CCCGCGCGAA TGGCTCTCCC CCTACCTGGA GCGGCGCCGC AAGGTGGGCT GGGACCTCTA TGGTCTGCTT GGCATTGCCA AGGGCGACAA GCAGCGCATG CACCTGCAGC ATGGGCGCAA CTACCGCTTC TTCGATGCGC CCGTGGGCCT GTTCTTCACG ATCGACCGCG CACTGCAGGA AGGAAGCCTG CTGGACTGCG GCATGTTCCT GCAGAGCGTG ATGATCGCCG CGCGCGGCCG CGGCCTTCAC ACCTGTCCGC AAGCCGCGTT CCTGAAGTTC CATCGCCAGA TCGCCGAATT CCTGGACATC CCCGCGGGCC AGATGCTCGT CTGCGGCATG AGCCTGGGCT ACGCCGACGA GTCCTCCATC GAGAATTCGC TGGTCACCGA GCGGGAGCCG GTTTCCGCAT TCACGACGTT CCACGACAGC ACGAAGGAGA CAAGGACATG A
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Protein sequence | MNRMMAPPLD AQALQGAVDW AIATRRSIRA YLPRPVPQQE IEAILSTARY SASGMNMQPW HVHVLTGPAK AGLSAAIAAL DDDPARSGEL LEPYDYYPRE WLSPYLERRR KVGWDLYGLL GIAKGDKQRM HLQHGRNYRF FDAPVGLFFT IDRALQEGSL LDCGMFLQSV MIAARGRGLH TCPQAAFLKF HRQIAEFLDI PAGQMLVCGM SLGYADESSI ENSLVTEREP VSAFTTFHDS TKETRT
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