| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6220 |
|---|
| Symbol | |
|---|
| ID | 7975436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 950854 |
|---|
| End bp | 951297 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644796790 |
|---|
| Product | MaoC domain protein dehydratase |
|---|
| Protein accession | YP_002948049 |
|---|
| Protein GI | 239820864 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAGT TCGAGCCCGC TGCCGGTGCA CCTGTCGAGC CCGGCTACCG CTTCTCGCGA
ACCCACACCT TCGACGAAGA ACAGGTCAGG GCATTTGCCC TGGCCGCGGG AGACGAGAAC
CCGCTGCACC ACGATGCGGC GTTCGCAAGA AGCACGCGCT TCGGCGCAAT GATCGCGAGC
GGCACGCACA CCACCTCGCT GCTGATGGGG CTGACCGCCA CGCATTTCGC GAAGAAGGGA
AATGTCCTGG GCATCAACTT CTCCGTCGAT CTGCTGCGGC CGGTGCTGGC GAGCGAGACG
GTGCTGATCG AGTGGAGCGT TTCATCGATC GCGGCCCGTC CGAAGGGCGG CAGCATCATC
GAGCTGCAGG GATGCATGAA AGGATCGGAC GACCGGACCC GCGTGCTCGC GCACGGCACC
GTCCTGCTGA CCGCCGGCGA GTGA
|
|---|
| Protein sequence | MVEFEPAAGA PVEPGYRFSR THTFDEEQVR AFALAAGDEN PLHHDAAFAR STRFGAMIAS
GTHTTSLLMG LTATHFAKKG NVLGINFSVD LLRPVLASET VLIEWSVSSI AARPKGGSII
ELQGCMKGSD DRTRVLAHGT VLLTAGE
|
|---|
| |