Gene Vapar_6209 details

Gene Information

• Locus tag: Vapar_6209
• ID: 7975099
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 939444
• End bp: 940070
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644796779
• Product: transcriptional regulator, TetR family
• Protein accession: YP_002948038
• Protein GI: 239820853
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAAAA AACCGGTCAC CAAGCCCAGG AAAATCGCGG TCCAGGAGCG ATCGCGCGCG 
ACGGTCGGCA GCCTGATCGA GGCAACTGCT CGCATTCTGG TCAAGGAAGG CTTCGACAAG 
GCGAGCACCA ACCGCGTCGC GGAAGTCGCG GGGGTGAGCA TCGGCTCGCT CTATCAATAC 
TTCCCCAGCA AGGAGGCACT CGTCGCCGCC GTGATCGAGC GCCACCAGCA GCAGATCATG 
CAAATGGTCC GCAGCGAACT GGCGCAGGTC AGGGCCCAGC CGCTGGACCA GGCGATACGC 
CGGTTCGTCG CGGTCGCGGT TGCAGCGCAT CGGCTCGATC CCCAGCTGCA CCGCGTGCTT 
GCAGAGCAGA TCCCGCGCGT GGGAAGGCTC GAGAAGCTGG AGACTTTCAG CCGCGAAAAC 
TTCAGCCTGT TCAGGGCCTA CCTCGAGACG GCGCGGGACG AGCTGGCCGT CGACGACCTG 
GAGCTCGCAT CGTTCGTCTG CGTCACCACG ATCGAGGCAT TGACGCACAA CGCGGTGCTG 
CACCATGGCA AGGTGCTGAC CGGCGATCGA ATGGATGCGC TCATCGACGA GGGCGCACGC 
CTCGTGACCG GCTATCTCAA AGGCTAG 

 

Protein sequence

MAKKPVTKPR KIAVQERSRA TVGSLIEATA RILVKEGFDK ASTNRVAEVA GVSIGSLYQY 
FPSKEALVAA VIERHQQQIM QMVRSELAQV RAQPLDQAIR RFVAVAVAAH RLDPQLHRVL 
AEQIPRVGRL EKLETFSREN FSLFRAYLET ARDELAVDDL ELASFVCVTT IEALTHNAVL 
HHGKVLTGDR MDALIDEGAR LVTGYLKG