Gene Vapar_6204 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6204 
Symbol 
ID7975094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp935457 
End bp936056 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content68% 
IMG OID644796774 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002948033 
Protein GI239820848 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.308886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAACA TCATGCGAAA TTCGAAACAT CCCGTCCGAA CGGCGGCCAA GGAAGCCTCG 
CACGAGCGCA TCGTCTCGGC TGCGGCGCGG GCGATCCGCC GCAGCGGCTA TGACGGAACC 
GGAGTCGCCG ACATCATGAA GGAGGCCGGC CTGACCCATG GCGCCTTCTA TGCCCACTTC 
GCCTCGCGCG AGGCCATGCT GGCGGAAGCA GCGGAGCGGG CCTGTACGGA GTCGGCCGCC 
ATAGCGGCGG AGGCGGCTGC CAGCGTGCCC CGGGAACAGG CCCTGACCTA CATGCTCCAC 
GCTTATCTTT CGCGAGAAAA CCTGGAGCAG GTCGAGCGGG GGTGCCCCCT GGCCGCGCTG 
GGTTCGGAAA CCGCGCGCCA AACCCCCGAA GTCCGGCGAG CGAACACCCG CTACATCAAG 
GAAATGGTCG ATCTTGTGGC CCGCCAGTCG CCGGATTGGG GGCAGGCCGG TGCCCACGAA 
CGCGCGCTCG TGACCGTCGC CACCATGGTC GGCACCCTGC TGCTGGCCCG CGTCGTCGAC 
GAGCCTGCGC TGTCCGACAG CCTGCGCGAG GCTGCCTTGA AGCACCTGCC CATCGCCTGA
 
Protein sequence
MMNIMRNSKH PVRTAAKEAS HERIVSAAAR AIRRSGYDGT GVADIMKEAG LTHGAFYAHF 
ASREAMLAEA AERACTESAA IAAEAAASVP REQALTYMLH AYLSRENLEQ VERGCPLAAL 
GSETARQTPE VRRANTRYIK EMVDLVARQS PDWGQAGAHE RALVTVATMV GTLLLARVVD 
EPALSDSLRE AALKHLPIA