| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6201 |
|---|
| Symbol | |
|---|
| ID | 7975091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 933173 |
|---|
| End bp | 934066 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796771 |
|---|
| Product | alpha/beta hydrolase fold protein |
|---|
| Protein accession | YP_002948030 |
|---|
| Protein GI | 239820845 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.116135 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGG AACGGCTCCG CCTGTCCGGC GGCACCGAAC TGTCGTTCAC CACCGCGGGC
GAGGCGTCCA GACCCGCCTT GCTGCTGCTG CACGGAACCC CGAACTCGGC CCGGCTGTTC
CGGGCAGTCG TGCCCGCGCT GTCGCAAGCC GCTTTCGTGA TCGCGCCGGA TCTGCCCGGC
CACGGCGAAT CCGAGCCGCT GCCGGCCCCG TCGTTTGCCG CCATCGGCCA GGCGATCGCC
GAACTGCTGG ACTCGCTCGA GATCGGGCCG CGGTTCATCT ACCTGCATGA CTGGGGCGCG
CCCGTGGGCC TGCAGATCGC GATGCAGGCG CCAGGGAAAG TCCTGGGCCT CATCGTGCAG
AACGCCAACG CACATCGAAC GGGGTGGGGA CCGGGATGGG CCGCAACGCA GGCCTACTGG
TCGCAGCCCA ACGCGGAAAA CCAGGCGGCG GCGACCGCGC ACCTGACGCT CGCGGGCACA
CGCGACACCT ACATCGCGGG CGTTCCGCCG GAGGTGGCCG AGCGCATCCC CGCTGAGCAC
TGGGAAGAGG ATTGGCGGGT GATGAACCTG CCGGGCCATA TGGACACCCA GCGGGCGCTG
ATCGCGGACT ACGGAAACTA CGCCGCCCGC TTCGGCGCCA TCGCCCAGTA CCTCGAGCGT
TGGCAGCCCC CTGCCCTCAT GGCGTGGGGA AGGCACGATA TCTATTTCGA CCTTGCCGAG
GTCCTGTCCT GGATGCGTGC GCTGCCCAGG ATGGAAGCCC ATGTCCTGGA CGCGGGCCAC
CTGCTGCTCG AAACCCATGC GGCCGAGGCC GTTGCGCTGA TGCTTGATTT CATCAGGCGT
ACCCCTCTCC TCCCGATACC CATCACACGG CGCGATCCCT CGCGCTGCTC CTGA
|
|---|
| Protein sequence | MKTERLRLSG GTELSFTTAG EASRPALLLL HGTPNSARLF RAVVPALSQA AFVIAPDLPG
HGESEPLPAP SFAAIGQAIA ELLDSLEIGP RFIYLHDWGA PVGLQIAMQA PGKVLGLIVQ
NANAHRTGWG PGWAATQAYW SQPNAENQAA ATAHLTLAGT RDTYIAGVPP EVAERIPAEH
WEEDWRVMNL PGHMDTQRAL IADYGNYAAR FGAIAQYLER WQPPALMAWG RHDIYFDLAE
VLSWMRALPR MEAHVLDAGH LLLETHAAEA VALMLDFIRR TPLLPIPITR RDPSRCS
|
|---|
| |