| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6200 |
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| Symbol | |
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| ID | 7975090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 931759 |
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| End bp | 933204 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796770 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002948029 |
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| Protein GI | 239820844 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.111664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGACAT CCACACTTCG ACCCGACTCT TCTTCCACTG CTTCACGCAC CGCCGAAGCC
CGGGAGGTGA ACGACGACGC AAAGGCGGTG CACGATGTCG ACGGCCTGCC GCTGCCGCGG
CGCTGCCTGG CCGTCGCCGC GATCCTTGGC GCGGGCGTGC TGGTGGTGCT CGATGGCGCC
ATCGCCAATA TCGCGCTGCC CAACATTGCC CAGCAGTTGC AGGCGAGACC CGCCGACGCC
GTCTGGGTCA TCACCGCCTA CCAGCTGGCC GTGGTCATGT TCCTGCTGCC GGCTTCTGCG
GTCGGGGAGA GCTTCGGGTA TCGGCGGGTC TTCGCGGGCG GCGTTGCGCT GTTCACCGCG
GCGTCGGTGC TGTGCGCGTT GGCCCCATCG CTGCCATGGC TCGTGGCCGC AAGGTGCCTT
CAGGGCCTGG GCAGTGCGGC CGTCATGCCG CTCGGGCTGG CGTTGCTGCG CTTCACTTAT
CCACGCCGGC TGCTGGCACG CTCGATCGCG TGGAATGCGC TCGCCGTCGC GGCTGCTTCA
GCGGCAGGCC CCACCCTTGG CGCCTTCATA CTCTCCGCGG CAAGTTGGCC GTGGCTCTTT
GCGGTGAACC TGCCGATCGG CCTTCTCGTG CTCGCCGCCT GCGCGGGCTT GCCGAGCCCG
GCGCGCTCGG TGCGCCGCAT CGACGGCTGG AGCATCGCGC TCAACGCGGT CATGTTCGCC
TCTTTCGTGC TGGGGAGCGA CCGGCTGGTG GCGCAGCCGC TGCACGGCGG CGCGTTGCTT
GCGCTGTCGG CCGCTTGCAT GGTCCTGCTG GTGAGGCGCG AGATGCCGAA GGCGGCACCG
TTGATCCCGC TCGACCTGCT GCGCGTGCAT TCCTTTCGGA TCTCGGTCAT TGCCTCCGTG
TGCTGCTTCA CCGGCCAGAT GGCCGGCCTC GTGGCACTGC CGTTCTACAT CCAGCACGAA
CTCGGCCAGA GCGCGGTGAT GGCCGGCCTC TTGATGACCC CCTGGCCCTT GGCGGTGATG
CTGGCCGCGC CACTGTCGGC GCGCCTGGCC CAGCGCGTGC CCAGCGCCTG GCTGTGCGCG
GCCGGCAGTG CGTGCTTCGC GAGCGGTCTG GCCCTGTGCG CCCTGTGGCC GCTGCACGGC
AGCCCGGCCG TGCCGATCGC CGCGTTCACG AGCCTCGCAG GCCTGGGCTT CGGCTTCTTC
CAGACACCGA ACAACCAGAA CATGCTGCTC TCGGCACCCA AGGAACGCAG CGGCGCCGCC
GGTGGCGCGC AAGGCACCGC CCGGCTCACG GGCTTGACGC TCGGCAGCCT GTTGATGAGC
CTGATGTTCG AGCTGCTGCC GTCCCACAGC GTGGTGCACT GGGGCCTGGC GATCGCTGCT
CTGGTTGCGT TGGCGGGGAG CGCGGCGAGT TTGCTCAGGA GCAGCGCGAG GGATCGCGCC
GTGTGA
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| Protein sequence | MLTSTLRPDS SSTASRTAEA REVNDDAKAV HDVDGLPLPR RCLAVAAILG AGVLVVLDGA
IANIALPNIA QQLQARPADA VWVITAYQLA VVMFLLPASA VGESFGYRRV FAGGVALFTA
ASVLCALAPS LPWLVAARCL QGLGSAAVMP LGLALLRFTY PRRLLARSIA WNALAVAAAS
AAGPTLGAFI LSAASWPWLF AVNLPIGLLV LAACAGLPSP ARSVRRIDGW SIALNAVMFA
SFVLGSDRLV AQPLHGGALL ALSAACMVLL VRREMPKAAP LIPLDLLRVH SFRISVIASV
CCFTGQMAGL VALPFYIQHE LGQSAVMAGL LMTPWPLAVM LAAPLSARLA QRVPSAWLCA
AGSACFASGL ALCALWPLHG SPAVPIAAFT SLAGLGFGFF QTPNNQNMLL SAPKERSGAA
GGAQGTARLT GLTLGSLLMS LMFELLPSHS VVHWGLAIAA LVALAGSAAS LLRSSARDRA
V
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