Gene Vapar_6197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6197 
Symbol 
ID7975087 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp929189 
End bp929845 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content69% 
IMG OID644796767 
Productbifunctional deaminase-reductase domain protein 
Protein accessionYP_002948026 
Protein GI239820841 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0262] Dihydrofolate reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.187207 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCGAT TGCTCGTGCG CAGCTTCGGC GTTTCGCTCG ACGGCTTCGC CGCCGGCCCG 
GACCAGAGCC TGGAGCACCC GCTGGGTGTT CGCGGTCCCG AACTCATGGA CTGGTTCTTT 
CCCACGCGCG TCTGGCAGCA GATGCAAAAG ACGGGCGAGG CCAATGGCGA GACCGGCATC 
GACAACGAGA TGGCCGAACA AGGCTTTGCC GAGATGGGTG CCTGGATCCT CGGGCGCAAC 
ATGTTCGGGC CGGTGCGCGG TCCCTGGCCC GACGAAAGCT GGAAAGGCTG GTGGGGCGAC 
GAGCCTCCCT ACCACGTGCC GGTCTTCGTG CTCACCCACC ATGCGCGCGC ACCGCTGACG 
ATGCGCGGCG GCACCACCTT CCACTTCGTC ACGGGCGGCA TCCACGAAGC GCTCGCGCTG 
GCACAAGCGG CCGCAGGCGC ACGCGACGTG CGCGTGGGCG GCGGCGTGGC GACGGTGCGC 
GAATACCTGA GGGCCGGGCT GATCGACGAA CTGCACCTGG CCGTGCGTCC GGTGTTGCTG 
GGCAAGGGCG AGGCGCTGTT CGCAGGCCTG GACCTGCCGG TGCTGGGCTA CCGCTGCGAA 
CGGCAGGTGG CAGGCGAGAG GGCCACGCAT GTGTTCCTGC GACGTAGCGC GCTTTGA
 
Protein sequence
MARLLVRSFG VSLDGFAAGP DQSLEHPLGV RGPELMDWFF PTRVWQQMQK TGEANGETGI 
DNEMAEQGFA EMGAWILGRN MFGPVRGPWP DESWKGWWGD EPPYHVPVFV LTHHARAPLT 
MRGGTTFHFV TGGIHEALAL AQAAAGARDV RVGGGVATVR EYLRAGLIDE LHLAVRPVLL 
GKGEALFAGL DLPVLGYRCE RQVAGERATH VFLRRSAL