Gene Vapar_6173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6173 
Symbol 
ID7975063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp906365 
End bp906973 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content62% 
IMG OID644796743 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002948002 
Protein GI239820817 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGCAAG CAGAACTGCC TCAGAACGGA TTGCGCGAAA GGAAACGCCG CGAGACGCTT 
CAACGCGTTG CGCAGACGGG CCTCGAGTTG TTCGTCGTCA AGGGCTATGA ACAGACCACG 
CTGGACGACA TCGCGGCCGC CGCCGGCATA TCGAGGCGGA CTTTCTTCCA CTACTTCAAG 
TCGAAGGACG AGATCCTGCT GGCTTGGCAG GGAGGACTGG TCGAGTCGGT TCGTGCCTCC 
GTGCTCGAGG TATCGACCGA TCAATCGCCT CTGGATGCCT TGTGCGGTGC GTTGCTGAAG 
CAGGCCTCGC ACTACGACAC GTCCACCACG CTCGTCATCG CGCATCTTCT TCGATCGAGC 
GACCAGCTGC GCGCAGCCAA CCAGGCCAAG TACCTGCAGA TGGAGCAGGC GGTGTTCGAA 
GCGCTCTGTC GCCTCTGGCC ACAGCGCACC CGCCGCGAAG GCCTGCGAAT GGTGGCAATG 
GTCGGCATGG GCGCTTTCCG TGTTGCCGTC GATGAATGGG CCGACGGCGG AGGAAAGGAG 
CCATTCACCC GGCGCATCGA GAAGACATTC GCCAACTTGC GCGCCGAGCT GATGAGTGGA 
AGGGCATAG
 
Protein sequence
MVQAELPQNG LRERKRRETL QRVAQTGLEL FVVKGYEQTT LDDIAAAAGI SRRTFFHYFK 
SKDEILLAWQ GGLVESVRAS VLEVSTDQSP LDALCGALLK QASHYDTSTT LVIAHLLRSS 
DQLRAANQAK YLQMEQAVFE ALCRLWPQRT RREGLRMVAM VGMGAFRVAV DEWADGGGKE 
PFTRRIEKTF ANLRAELMSG RA