| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6142 |
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| Symbol | |
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| ID | 7975588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 863283 |
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| End bp | 864635 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796697 |
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| Product | gluconate transporter |
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| Protein accession | YP_002947971 |
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| Protein GI | 239820786 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG2610] H+/gluconate symporter and related permeases |
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| TIGRFAM ID | [TIGR00791] gluconate transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0156106 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGGAA TGAGCAAAGA GGTATTCCTG CTCGTCGACG CCCTGGTGGC GATCCTCGGG
CTGATCTTTC TGATCACGCG CTGGCGCGTG CACCCCTTCA TCGCGCTGAC GCTGGCCGCG
GGCTTCCTCG GCCTGACCTC GGGCATGCCG GTGGACCTGG TGATGAAGTC CTTCCAGGAG
GGCTTCGGCG GAGTGCTGGG CTTCGTGGGC ATCGTGCTGG GCCTGGGCAC CATGCTGGGC
AAGATGATGG CCGAATCGGG CGGCGCCGAC CGCATTGCGC GCACGCTGAT CGACGCCTTC
GGCCGCGAGC GCGTGCACTG GGCGATGATG TTCGCGGCCT TCCTGGTGGG CATTCCGCTG
TTCTTCGAGA TCGGCTTCGT GCTGCTGATC CCGCTGGTGT TCATCGTGGC GCGGCGCACC
GGCGTCTCGC TGATCCGCAT CGGCATTCCG CTGCTGGCCG GCCTGTCGGT GGTGCACGGC
CTGGTGCCGC CGCATCCGGG GCCGCTGCTG GCCATCGGCG TGTTCGGCGC GGACATCGGA
AAGACCATCT TCTACGGCCT CATCGTCGGC CTGCCCACCG CGATGATCGC AGGGCCGATC
TTCGGCAAGT TCATCTCGAA GTACGTGCCG GGCGAAGCCT CGCCCGAGCT GATGGAGCAG
CTGGCGCACG AACCCGAGGC GCGCGAGCTG CCCGGCTTCG GCATCACGCT GCTCACGGTG
CTGCTGCCGG TGGGGCTGAT GCTGCTGAAG ACTTTTGCCG ACGTCGCGCT CGACGACAAG
AACGTGATGC GCCACTGGAT GGACTTCATC GGCCACCCGA TCACCGCGCT GCTGGCGGCG
CTGCTGCTGT CGCTCTACAC CTTCGGCACC GCGCGCGGCT TCACCGCCAA GCAGATCATG
AAGTTCGTCG ACGACAGCCT GGCGCCCACC GCGGCCATCG TGCTGATCAT CGGCGCGGGC
GGCGGCTTCA AGCAGATGCT GGTGGCGAGC GGCGTGGGCA ACGCGATCGG GCAGATGGCG
CTGCATGCGC AGGTCTCGCC GATCCTGCTC GCCTGGCTGG TGGCGGGGCT GATCCGCATT
GCCACCGGCT CGGCCACGGT CGCCACCATC ACGGGCGCGG GCATCGTCGC GCCGCTTGCC
ACCATGGTGC CGGGCGTGAA CCGCGAACTG CTGGTGCTGG CCACGGGCGC GGGTTCGCTG
ATCCTCTCGC ACGTCAACGA CGCGGGCTTC TGGCTGGTCA AGCAATACTT CAACATGACG
GTGGCCGAGA CCTTCAAGAC CTGGACCGTG ATGGAAACGC TGATCTCGGT CGTGGCCATC
GTGTTCATCA TGCTGCTCGG CATGGTCGTG TAA
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| Protein sequence | MFGMSKEVFL LVDALVAILG LIFLITRWRV HPFIALTLAA GFLGLTSGMP VDLVMKSFQE
GFGGVLGFVG IVLGLGTMLG KMMAESGGAD RIARTLIDAF GRERVHWAMM FAAFLVGIPL
FFEIGFVLLI PLVFIVARRT GVSLIRIGIP LLAGLSVVHG LVPPHPGPLL AIGVFGADIG
KTIFYGLIVG LPTAMIAGPI FGKFISKYVP GEASPELMEQ LAHEPEAREL PGFGITLLTV
LLPVGLMLLK TFADVALDDK NVMRHWMDFI GHPITALLAA LLLSLYTFGT ARGFTAKQIM
KFVDDSLAPT AAIVLIIGAG GGFKQMLVAS GVGNAIGQMA LHAQVSPILL AWLVAGLIRI
ATGSATVATI TGAGIVAPLA TMVPGVNREL LVLATGAGSL ILSHVNDAGF WLVKQYFNMT
VAETFKTWTV METLISVVAI VFIMLLGMVV
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