| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6141 |
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| Symbol | |
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| ID | 7975587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 862060 |
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| End bp | 863091 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644796696 |
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| Product | transcriptional regulator, LacI family |
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| Protein accession | YP_002947970 |
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| Protein GI | 239820785 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.118056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGACG CCCCCGACCG CCCCCGACCC CGTTCCTCGA GCCACGTCAC GCTGGACGAC
GTGGCCCGCG TCTCGGGCGT GAGCCCGATC ACCGTGTCAC GCGCGCTGCG CGGCGCGCGC
AACGTGGCGC CCGAGCTGAA GGCCCGCGTG CAGGCGGCGG TCGACCAGCT GGGCTACGTG
CCCAACGTGG CGGCGCGCGC GCTGGCTTCG GCGCGCAGCT CCCACGTGGC GGTGCTGATT
CCCTCGCTGA CCAACCAGCT CTTCGTGGAA CTGCTCGAGG CGGTGCAGGA CGCGCTCGCG
CCGCACGGCT ACCAGTCGCT CATCGGCGTG ACCCACTACG ACCCCGCGCA GGAAGAGGCG
CTGCTGCGCA GCCACCTCTC GCAGCGCCCG GCGGGCCTGC TGCTGACGGG CTTCGACCGC
AGCGCCGCGG CCGCGCAGAT GCTCGAGCGC AGCCATGCGC CCTGCGTGTA CATGATGGAA
ACCTCGGCCG CGCCCGGCGT CCACAGCGTG GGCTTTTCGC AGCGGGACGC GGGCCGCGCC
ATCACCCGGC ACCTGCTGCA GCGCGGCCGC CGGCGCATTG CCTATGCCGC CGGCCAGCTC
GACCCGCGCG TGCTGCTGCG CCTGGAGGGC TACCGCGAGG CGCTGCGCGA GGCCGGCTGC
CACGACCCGG CGCTCGAACT GCTGGTGCCG GGCCCGACCT CCATGGCGCT GGGCGGCCGC
CAGTTCGAGG ACCTGCTCGC GCGCCACCCG GACGTGGATG CCATCTTCTA CTGCAACGAC
GACCTCGCCC AGGGCGGGCT GCTCGCCGCG CTGCGCAGCG GCGTGCCCGT GCCGCAGCGC
GTGGCGATCG CCGGCTTCAA CGACCTGGGC GGCAGCGACC AGATGCTGCC GCCGTTGACC
ACCGTGCGCA CGCCGCGAAA GGAAATGGGC GAGCGCGCGG CCGGCATGCT GCTCGCGCTG
ATGCGCGCCG AGACCGTGGC GGAGCGCACG GTGGACCTGG GGTTCGAGTT GGTGGTGCGG
GAGAGCAGCT GA
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| Protein sequence | MADAPDRPRP RSSSHVTLDD VARVSGVSPI TVSRALRGAR NVAPELKARV QAAVDQLGYV
PNVAARALAS ARSSHVAVLI PSLTNQLFVE LLEAVQDALA PHGYQSLIGV THYDPAQEEA
LLRSHLSQRP AGLLLTGFDR SAAAAQMLER SHAPCVYMME TSAAPGVHSV GFSQRDAGRA
ITRHLLQRGR RRIAYAAGQL DPRVLLRLEG YREALREAGC HDPALELLVP GPTSMALGGR
QFEDLLARHP DVDAIFYCND DLAQGGLLAA LRSGVPVPQR VAIAGFNDLG GSDQMLPPLT
TVRTPRKEMG ERAAGMLLAL MRAETVAERT VDLGFELVVR ESS
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