| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6133 |
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| Symbol | |
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| ID | 7975579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 854725 |
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| End bp | 855978 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796689 |
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| Product | putative substrate-binding component of ABC transporter |
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| Protein accession | YP_002947963 |
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| Protein GI | 239820778 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.32554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTCA ACCGCAGACA GTTCACGCAG GCCGCCGCCG CGCTTGCCGC CACGGGCGCC
GCGCCGCGGG TGTTCGCCGC CGACACGCTC AAGATCGGCT ACGTGTCGCC CCAGACCGGG
CCGCTCGCGC CCTTCGGCGA GGCCGACAAG TGGGTGATCG AGCAGATGAA GGCCGCCTTC
AAGGACGGCC TCAGCGTAGG CGGCAAGAAG TACGCCGTGC AGATCGTGCT GAAGGACAGC
CAGTCGAACC CCAACCGCGC GGGCGAGGTC GCCAACGACC TGATCCTCAA GGACAAGGTC
GCGCTCGTGC TCACGGCAGG CACGCCCGAG ACCGCCAACC CGGTGAGCGA TGCCTGCGAA
CTCAACGAGG TGCCGTGCAT CTCCAGCGTG GTGCCGTGGC AGCCCTGGTT CTTCGGCCGC
AAGGGCGACC CCGCGAAGGG CTTCAACTGG ACCTACCACC TGTTCTGGGG GCTGGAGGAC
GTCATCGCCA ACTTCACCAA CGGCTGGAAG ACCGTGGCCA CCAACAGGAA GGTCGGCGGG
CTGTTTCCCA ACGACGGCGA CGGCAACGCC TGGGGCGACA AGGAACTGGG CTTTCCGAAG
CCGCTCGCGC AGATGGGCTT CACGCTCACC GACCCCGGCC GCTTCCAGAA CGGCACGCAG
GACTTCAGCG CGCAGATCGC GGCCTTCAAG CGCGACAACG TCGAGATCGT CACCGGCGTG
GTGATCCCGC CCGATGCCAA GACCTTTCTC ACGCAGGCGC GGCAGCAGGG CTTCAAGCCG
AAGGTCGTCA CGCTCGGCAA GGCGCTGCTG TTCCCCGGCG CGATCGAGGC GCTGGGCGAC
CTGGGCGACG GCCTCTCGAC CGAGGTGTGG TGGAGCCCCT CGCATCCGTT CACGTCCAGC
CTCACGCAGC AAAGCGCGAA GGCGCTGGCC GAGGCCTACG AGGCCGGTGC GAAGAAGCAG
TGGACGCAGC CCATCGGCTT CGCGCATGCG CTGTTCGAGG TGGCGGCGAA CGCGCTGTCG
CGTGCCAAGT CGCTGAAGGC CGGCGACGTG CGCGATGCGG TCGCATCGAC TTCCATCGAT
TCCGTGGTCG GCCCGGTGAA GTGGGGCGGG CCGGGCCCGT TCAAGAACGT CAGCAAGACG
CCGCTGGTGC TCGGCCAGTG GGGCAAGGGC AAGAAGTACA AGGTCGAGCT CGGCATCGTG
AACAACGAAG CGGCCAAGGG CATTCCGGCC GGCGGCACGC TGCGGCTGCT CTGA
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| Protein sequence | MTFNRRQFTQ AAAALAATGA APRVFAADTL KIGYVSPQTG PLAPFGEADK WVIEQMKAAF
KDGLSVGGKK YAVQIVLKDS QSNPNRAGEV ANDLILKDKV ALVLTAGTPE TANPVSDACE
LNEVPCISSV VPWQPWFFGR KGDPAKGFNW TYHLFWGLED VIANFTNGWK TVATNRKVGG
LFPNDGDGNA WGDKELGFPK PLAQMGFTLT DPGRFQNGTQ DFSAQIAAFK RDNVEIVTGV
VIPPDAKTFL TQARQQGFKP KVVTLGKALL FPGAIEALGD LGDGLSTEVW WSPSHPFTSS
LTQQSAKALA EAYEAGAKKQ WTQPIGFAHA LFEVAANALS RAKSLKAGDV RDAVASTSID
SVVGPVKWGG PGPFKNVSKT PLVLGQWGKG KKYKVELGIV NNEAAKGIPA GGTLRLL
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