| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6123 |
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| Symbol | |
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| ID | 7975569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 844845 |
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| End bp | 846455 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796679 |
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| Product | beta-lactamase |
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| Protein accession | YP_002947953 |
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| Protein GI | 239820768 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.299024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCGG CGCTGGGGGC CGCCCTGGCA CTGGGCGGCT GCGCCGGCGG CAGCGATGGC
CCGGCGGTGT TCGTGCCGGT GGCCGCCAGC ACCGTGCCGG TCGCGGCTGC GTCGCCCTCG
GAAACCTATG CGGTGGCCAT ACCGCCGGCG CAGATCGATG CTGCCGTGGC CAGGCTCGAC
CAGCTGGCGG CCGACATCAT GCGCCGCTCC AGTATTCCGG GCATGGCCGT GGCCGTGGTG
AAGGACGGCC GGACGGTATA TGCCAAGGGC TTCGGCGTGC GAACGGTGGG CGCGCCCGAA
CCGGTCGATG CGGACACCGT GTTCCAGCTC GCATCGCTGT CGAAGTCCGT CGGCGCGACC
GTCGTGGCGG GGCTCGTGGG CAGGCAGGTG CTGTCCTGGG ACACGCCCGT CGCCACGCAC
TTGCCCGGCT TCAGGCTGTC GGACGAGTGG ATCACGCAGC AGGTGACGAT GGGCGATTTC
TTCGCGCACC GCTCGGGGCT CTCGGCGCAC GTCGGCGACC AGCTCGAAGA CCTGGGCTAC
GGACGCCAGG ACATGCTGGA CCGCCTGCGC TACGTGCCGC TCGATGGCTT CAGAACGCGA
TACGCCTACA CCAACTTCGG CCTCACGGCC GGGGCCGAAG CGGCAGCCAG GGCGGCCGGG
CTCGACTGGG CGACGCTGTC CGAGCGCACG CTCTACCAGC CGCTGGGCAT GGCGTCGACG
AGCTCCCGCT TCGCCGATTT CATGCAACGC GGCAACCGCG CCTCGCCCCA TGTGAAGACC
GAGGCAGGCT ACCAGGCACA GTACCAGCGC GACCCCGATG CGCAGTCGCC GGCCGGTGGC
GTGAGCGCCA GCGCCAACGA CATGGCGCGC TGGATGTCGA TGGTCCTGCA GCAGGGCAGC
TTCCAGGGCC GCCCGGTGGT CGAGGCCGAG GCCTTGCTGC CCGCGACCAG CGCGCAGATC
GTCTCGTCGC CGTCCCGCAA CCCGAACGAG CGCGCGGGCT TCTACGGCTA TGGCTTCAAT
GTCGGGACCT CGCCTTCGGG GCGGGTCAAG CTCTCGCATT CGGGCGCCTT CCTGCTGGGG
GCGGGCACGG CCTTCTCGAT GATTCCATCG GCGGGTGTCG GCATCGTCAC GCTCACCAAC
GCGGCGCCGG TGGGCGCTGC CGAGGCCATG AATGCCGCCT TCGACGACCT GGTCGAGTTC
GGCGCGCTCA CGCGGGATTG GTACGAGGCC TATGCACCGC TGATGCAGGG CCTGTACGCG
CCCGAGGGCA CGCTGGCCGG CCAGCCGCCG CCGGCGCAAC CCGTGGCGCC GCTCGGCAGC
AATGCCTACA CCGGCATCTA CGCCAACAGC TACTACGGCA ATGCCGTGGT GGAAACCGCC
GGCAGCGGCC TGGTCCTGAA GATGGGGCCG GGCGGCGCCA GGCGCTTTGC GCTGCGCCAC
TGGAGCGGCA ACACCTTCGT CATCGACCTG TCGGGCGAGA GCGCCACGCC GGGGTCCATC
TCGAGGATCG ATTTCAGGCC CGGCGTCTCG GGCCTGTCGG ACAGCGTGCA GATGGAGTTC
TACGCCGAGG ACACGACGCA CGGCGTGTTC ACGAGGATGC CTGTCCAGTG A
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| Protein sequence | MTAALGAALA LGGCAGGSDG PAVFVPVAAS TVPVAAASPS ETYAVAIPPA QIDAAVARLD
QLAADIMRRS SIPGMAVAVV KDGRTVYAKG FGVRTVGAPE PVDADTVFQL ASLSKSVGAT
VVAGLVGRQV LSWDTPVATH LPGFRLSDEW ITQQVTMGDF FAHRSGLSAH VGDQLEDLGY
GRQDMLDRLR YVPLDGFRTR YAYTNFGLTA GAEAAARAAG LDWATLSERT LYQPLGMAST
SSRFADFMQR GNRASPHVKT EAGYQAQYQR DPDAQSPAGG VSASANDMAR WMSMVLQQGS
FQGRPVVEAE ALLPATSAQI VSSPSRNPNE RAGFYGYGFN VGTSPSGRVK LSHSGAFLLG
AGTAFSMIPS AGVGIVTLTN AAPVGAAEAM NAAFDDLVEF GALTRDWYEA YAPLMQGLYA
PEGTLAGQPP PAQPVAPLGS NAYTGIYANS YYGNAVVETA GSGLVLKMGP GGARRFALRH
WSGNTFVIDL SGESATPGSI SRIDFRPGVS GLSDSVQMEF YAEDTTHGVF TRMPVQ
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