| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6120 |
|---|
| Symbol | |
|---|
| ID | 7975566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 841081 |
|---|
| End bp | 842901 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796676 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002947950 |
|---|
| Protein GI | 239820765 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.198202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC TCGTGTCGAA GCACCTGGCG GTCGACGCCG CGCTGGGCCT GCGCATACTG
CGCGAGCATG TGGCGTCGGT CTACGCCGGC CACAGCACGG CGATCCTGGC CCATTTCGGC
TTTGCCATCG CGCTGGCCAT CTTCAGCTAC TCGCGCCTCG ACCATCCTTT GCTGCTGTGC
TGGCTGCTCG TCCTTGCGGC CGTGGACCTG TACGCCTTGC TCGCACCGCG CTGGACCCCC
GCCACGCCGA TGGCCGACAG CCCCTACTGG GCGCGCAAGT ACGCGCGCCT GGTCACGATG
GTCAGCGTCG CCACGGCGCC GGCGCCCTTG TTCCTTGTAT CGACGACGGA CCTGGTCATG
ACCACCGTGT TCACGGTGGT CATCATCGGC AGCTGGACAC GCGCGGTGCA GGCGCGATGG
CCGCTGAAGC CGGCCATGTT CGGATACGGC ATTCCCATGA TGACCGGCCT CATTGCCGCG
CTGGTCTGGC ACGGCAACGC GCTGAACTGG TTCCTTGCCG CCTTCGGAAC CGTCAACCTG
GTGCTCACCT TCCGCGCCGG CTTGCAGGAG AACCGGCGGC TGACCGAATC GCTGCTCCTG
CGCTTCGAGA ACGAGGCCCT GGCCGCTCGC CTGAGCGAGC AGATCGCCGC CACCGAGCGC
GCCAGCGCCG AGAAGACCCG CTTCCTGGCT ACCGCCAGCC ACGACCTGCG CCAGCCGATG
CATGCCATCG CATTGTTCGG CGCCGCGCTG GAGAACGCGC TGGAGGGCCG GCCCGAAGTG
AAGAATGCCG AGCGCCTGAT GCGCGCGGTC GACACGCTGG GTGCCTCGCT CAACACCATG
CTCGACATCT CGCGCCTCGA CGCGGGGGTG GTGGTTCCCG ATCCATGCGC CCTGGAACTC
GACGCGCTGT TCCGCCCGCT CAACCACACC TTCTCGGCGC AGGCCGACCA GAAGAACCTG
CAGCTGCGCA TTCGCGCCAG CGGGCTGTGG GTACAGAGCG ACCCGCAGCT CCTGTACCGC
ATGCTCTCCA ACCTGGTCGA CAACGCATTG AAGTACACGC TGCACGGCGG CGTGACCGTG
ACGGCACTCG CGCGCGGCGA TCTTGTGCGG ATCGAAGTGC GCGACACCGG CATCGGCATT
GCGCCCGCGC AGCTGGAACG CATCTTCGAG GAGTTCTACC AGATCGGCAA TCCAGGACGC
GACCGCTCGC GCGGCCTGGG CATCGGGCTG TCGATCGTGC AGCGCTTGTC GCGTCTGCTC
GCGCATCCGG TGCAGGTGCG CTCGCGCCCG GGCCGCGGCA CCTGCTTTCG CCTGGTGGTC
CCGGCGGCCA AGGCATCGCT GGATTCGCCT GCGGACCTTC TGCTGCAGGA CCTCGAATCG
CCCGTGCGGC ATCGCTTCAC GATGCCCGAT CTGCGCGGAC CGGTCCTGCT GATCGACGAC
GAGTCCGAGA TCCGCGAAGC CATGACGGCA CTGCTGCAAG GCTATTCGCT CGATGTGGTG
GCCGTGGCCA ACGAGGCCGC CGCGGTCGAA GCATTGACGC ATCCCGATGC GCAAGCCAGG
CCCTTCGCAC TGCTGCTGTG CGACTACCGG TTGGCCGACG GCGTGGACGG ACTCGATGTC
GGGCAACGCC TGCGCGAACG CTTTCAACTC CATGCACCGC TGCTTCTGAT TACCGGCGAG
ACAGCGCCCG AGCGTTTGCA GCGCGTACGC GCCTCGGGCG TGCCGGTGCT GTTCAAGCCC
GTGAGCGCCG CAACGCTGCT GCAAGCCATG GCCGAGCTCG CGCCTGCAAG CCACCGGCGC
GCGCATCGGC GCGACAAGTG A
|
|---|
| Protein sequence | MSDLVSKHLA VDAALGLRIL REHVASVYAG HSTAILAHFG FAIALAIFSY SRLDHPLLLC
WLLVLAAVDL YALLAPRWTP ATPMADSPYW ARKYARLVTM VSVATAPAPL FLVSTTDLVM
TTVFTVVIIG SWTRAVQARW PLKPAMFGYG IPMMTGLIAA LVWHGNALNW FLAAFGTVNL
VLTFRAGLQE NRRLTESLLL RFENEALAAR LSEQIAATER ASAEKTRFLA TASHDLRQPM
HAIALFGAAL ENALEGRPEV KNAERLMRAV DTLGASLNTM LDISRLDAGV VVPDPCALEL
DALFRPLNHT FSAQADQKNL QLRIRASGLW VQSDPQLLYR MLSNLVDNAL KYTLHGGVTV
TALARGDLVR IEVRDTGIGI APAQLERIFE EFYQIGNPGR DRSRGLGIGL SIVQRLSRLL
AHPVQVRSRP GRGTCFRLVV PAAKASLDSP ADLLLQDLES PVRHRFTMPD LRGPVLLIDD
ESEIREAMTA LLQGYSLDVV AVANEAAAVE ALTHPDAQAR PFALLLCDYR LADGVDGLDV
GQRLRERFQL HAPLLLITGE TAPERLQRVR ASGVPVLFKP VSAATLLQAM AELAPASHRR
AHRRDK
|
|---|
| |