| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6117 |
|---|
| Symbol | |
|---|
| ID | 7975563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 837415 |
|---|
| End bp | 838350 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644796673 |
|---|
| Product | peptidoglycan-binding domain 1 protein |
|---|
| Protein accession | YP_002947947 |
|---|
| Protein GI | 239820762 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGT CCACAGGCAA GCCACGCCAG CAGCGCGCGC TCTCGAGACC GGCCATGGCC
ATGGCAGCAG CGGCAACGCT GCTGGCGCTT GCCGGCTGCC AGAACATGCC CGCGCTCGAC
ATGCAGATGG GCAGCCAGTC GGCCAAGACC GTTGCCACGG GCAGCGCCGC GGGCTCGGCC
ACGTCCGGTG AGAGCAGCGC GCTCGAGCGC TGCGATTCGC CGCTCGGCAC CGTCTCGCTG
ATCGAGAACG TCAATGCCGG CTGGTACACC ATCCTCACCG GCGAGTACCG CCTGCCGCCC
ACGGCCAACC TGCTGCGCCT TCTGGTGCAG CAGTCCAATT GCTTCGTGGT GGTCGAGCGC
GGCGCGGCCG GCATGAACGC GATGACGCGC GAGCGCGCGC TCATGCAGTC GGGTGAAATG
CGCGGCGGCA GCAACTTCGG CCGCGGCCAG ATGGTGGCGT CCGACTACGG CCTGTCGCCC
GAGATCGTGT TCAGCAACAA CGACGCGGGC GGACTCGGCG GCACCATCGG CGGGCTGGTC
GGCGGTGGCC GCGGCCGCGC CATCGCGAGC CTGGGTGCCA GCCTCCAGAC CAAGGAAGCC
GCGGCGCTGC TGACGCTCAT CGACAACCGC TCGGGCGTGC AGGTCGCGGC ATCGGAGGGC
AGCGCCTCCA AGACCGACTT CGCGGGCCTC GGCGAGCTGA CCGGCCTGCG CGGCGGCGGC
AACATCGGCG GCTACACCCG CACGCCGCAA GGCAAGGTGA TTGCCGCGGC CTTCATGGAC
GCCTTCAACC AGATGGTGCG TTCGCTGCGC AGCTACAAGG CGCAGACCGT GCGCGGCCAG
GGCCTGGGCG GCGGCGGCCG GCTCGGCGTG GATGGCGGCG CGGCGCCTTC GCAGACCTCG
GCGCCGCCGG CGTCATCGGG CCGCAGGAGA AAGTAG
|
|---|
| Protein sequence | MKKSTGKPRQ QRALSRPAMA MAAAATLLAL AGCQNMPALD MQMGSQSAKT VATGSAAGSA
TSGESSALER CDSPLGTVSL IENVNAGWYT ILTGEYRLPP TANLLRLLVQ QSNCFVVVER
GAAGMNAMTR ERALMQSGEM RGGSNFGRGQ MVASDYGLSP EIVFSNNDAG GLGGTIGGLV
GGGRGRAIAS LGASLQTKEA AALLTLIDNR SGVQVAASEG SASKTDFAGL GELTGLRGGG
NIGGYTRTPQ GKVIAAAFMD AFNQMVRSLR SYKAQTVRGQ GLGGGGRLGV DGGAAPSQTS
APPASSGRRR K
|
|---|
| |