| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6115 |
|---|
| Symbol | |
|---|
| ID | 7975561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 835129 |
|---|
| End bp | 836115 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796671 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002947945 |
|---|
| Protein GI | 239820760 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACTC GCACCCGGCG TTCGGCGCTC GCGCTGGCCG CACTCTCGTT GCTCTGCACA
GGCGCGAACG CGCAGCAGCA GCAACAGCAA CCGTCGTCGA CCAAGCCCAT TCGCCTGGTC
GTGCCCTTCG GCCCCGGCGG CGTGGCCGAC CTCACGGCGC GCACCGTCGC GCAAAAGATG
TCGGAATCCA TGGGCCAGAG CATCATCGTG GACAACAAGC CGGGCGCCGG CGGCGTGGTC
GCCTCCGATG CGGTGGCCAA GGCGGCGCCG GACGGGCTCA CCATGCTGCT GATGTCCAAC
GGCAATGCCG TGAGCGCGGG GCTGTTCAAG CGCCTGCCTT TCGACACGGT CCGCGACTTC
GCGCCGGTGT CGACGCTCGG CTATTTCGAC ATGGCCGTGG TGACAGCCGC TGACGCCCGG
TTCAGGACGA TGCAGGAGCT GCTGGCACAT GCGAAGGCGC ATCCCGGCAC CGTCAACATC
GGCACCATCA ACGTGGGCAG CACGCAGCAT CTGGCGGCCG AGCTCTTCAA GCGCAGCACC
GGCATCGACG CGCAGGTGAT TCCGTTCAAC GGCTCGCCCG CACTGATCAC GGCGCTGCGC
GGCGGGCAGG TCGACGCCGG CGTCGAGATC CTCGCGCCGA TCCTCGGGCA GATCAGCGGC
AAGTCGCTGC GCGCCCTCGC GGTCATGGGC GCGAAGCGCT CGTTCGCGCT GCCCGACACG
CCGACGGTCG CGGAGAGCGG CGCGCCCGGT TTCAAGGTCT CGTCATGGAA CGCGCTTGCC
GTGCCCGCGA AGACGCCGCC CGCGGTCATC GCGAGGCTCA GCAAGGAAGC CAACGCGGCG
CTCGCCACGC CGGAAGTCAA GGAACGGCTG CGCCAGCTTG GCGTCGAGGC GCAGGGCAGC
ACGCCGCAGC AGCAGGCGGA CCTCCTGAAG GACGAGATTC AGCGCTGGTC GGAAGTCATC
CGCCTGGCCG GCATTCCGAA GCAGTGA
|
|---|
| Protein sequence | MRTRTRRSAL ALAALSLLCT GANAQQQQQQ PSSTKPIRLV VPFGPGGVAD LTARTVAQKM
SESMGQSIIV DNKPGAGGVV ASDAVAKAAP DGLTMLLMSN GNAVSAGLFK RLPFDTVRDF
APVSTLGYFD MAVVTAADAR FRTMQELLAH AKAHPGTVNI GTINVGSTQH LAAELFKRST
GIDAQVIPFN GSPALITALR GGQVDAGVEI LAPILGQISG KSLRALAVMG AKRSFALPDT
PTVAESGAPG FKVSSWNALA VPAKTPPAVI ARLSKEANAA LATPEVKERL RQLGVEAQGS
TPQQQADLLK DEIQRWSEVI RLAGIPKQ
|
|---|
| |