Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6114 |
Symbol | |
ID | 7975560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 834225 |
End bp | 835160 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796670 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002947944 |
Protein GI | 239820759 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCTCA AGCAGCTGGA GTACTTCGTT CGCGTGGCCG AGCTGGGGAG CTTCACGCGC GCGTCGATCG TGATCGACGT GGCGCAGCCC GCGCTCAGCC GGCAGGTGCG CCAGCTCGAA GTGGAGCTGC GGCAGAACCT GCTGACGCGC AACGGCCGCG GCGTCACGCT CACCGATGCG GGCACGCTGC TGCTGGCGCA TGCCAGGGGC ATCCTGCACC AGATCGAGCG CGCCAAGGAA GACCTCGGCC GCATGCGCGG CGCGCTGGCC GGCCGCGTCA CGGTGGGCCT GCCGCCGAGC ATCGCCAAGC GCATTGCCGT GCCGCTGACC CGTGCCTTTC GCCAGCAGTT GCCCGATGCG CGCCTTGCCA TCACCGAGGC GCTGTCGAGC GCCCTGCAGG AATCGGTGAC CGCGGGCCGC ATCGACCTGG CGCTGCTCTA CAACCCCGCG CCCTCGGCCG ACATCGACAG CGTGGTCATC CTCGAAGAAG ACCTGTACCT GGTCGGACCG GCCACGCAGC CCGGCGGGGA GATCGCGCTG CGCGAGGTGG CCTCGCAGCC GCTCGTGATT CCGACCCAGC CCAATTCCAT CCGCATGCTG GTCGAGGCGG AAATGGCCAA CATCGGATGC CGCCCGGCCA TCGCGATGGA GATCGACGGC GTGGCCGCCA TTCTCGACCT GGTCATCGAT GGCGTTGGCT CCGCGGTGCT GTCCGCGAAC GCGGTGCTCA CCGCGCCTCG GCCGGAGGCT TTCGGCATCC GGCGGATCGT GGATCCTCCG CTGCGCAGCC GGCTGGCGCT GGCCGTCAGT TCGCAGCGTC CGGCCACGCT GACCCAGCAG GCCGTTCTCG CGCTGGTGCG CGAGGTCGTG GATCAGACGA TGAATGCTTC GCCGGCACCG GCGCTCACTG CTTCGGAATG CCGGCCAGGC GGATGA
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Protein sequence | MDLKQLEYFV RVAELGSFTR ASIVIDVAQP ALSRQVRQLE VELRQNLLTR NGRGVTLTDA GTLLLAHARG ILHQIERAKE DLGRMRGALA GRVTVGLPPS IAKRIAVPLT RAFRQQLPDA RLAITEALSS ALQESVTAGR IDLALLYNPA PSADIDSVVI LEEDLYLVGP ATQPGGEIAL REVASQPLVI PTQPNSIRML VEAEMANIGC RPAIAMEIDG VAAILDLVID GVGSAVLSAN AVLTAPRPEA FGIRRIVDPP LRSRLALAVS SQRPATLTQQ AVLALVREVV DQTMNASPAP ALTASECRPG G
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