Gene Vapar_6112 details

Gene Information

• Locus tag: Vapar_6112
• ID: 7975558
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 831288
• End bp: 833180
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644796668
• Product: integrase family protein
• Protein accession: YP_002947942
• Protein GI: 239820757
• COG category: [L] Replication, recombination and repair
• COG ID: [COG4974] Site-specific recombinase XerD

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGCAC TGATTCCGCG CAAGCTGCAC CGCGGACATT TCGCGTTCAT GCGGGCGCTG 
GCCCAGGGGC TCGACGAACG GGCCAGCTGG GACCGCTACC TGCGGCTCGA AGGCGAACAC 
ACCGACCTGC GGACCGTGCG CCGCACCATC GCCTGGATCC GCGACGAATT CGCGGCGGCC 
GCGCGGCGCG AGCACAAGCC AGGCACCGCC CGGCTGATCC TGCTCGACGC CGACCGCTTT 
TCCGCGGCGC CGGCGCTCCC GAGCCTGGCC GAGTTCGCCG TGGCGAACGG CCTGGAGGAT 
TTCTCCGAGT CCGAACAGGT CGAGGCCTAC GAGGCCGCCT ACCCGGCCGC GGGCAAGGCA 
GGGCAGGGCG CGCGGCCCTC GCGGCGGGCG CGCGTGGTCG AGCGCCAGCT CGAAGCGCTG 
CGCTGGCTCG AGAACCTGGT CGCCCAGGAC CCGCGGCCGC TCGACAGCGT GTCGGCATGG 
CTCAATCCCT CGGTGGCAAG CCGCCTGGAA CGCGCCGGCC TGCGCACGCT CCATGCGCTG 
GTCGAGCACA TCAACGGCAT CGGCTCGCGC TGGTGGGTGC ATGTGCCGGG CGTGGGCGAA 
CTCAAGGCGG CGCGCATCCT CGACTGGCTG CGCGCCAACG AACAGGTGCT GGGGCTGCGC 
ATCGGCGCCC ACGCGATGAC GCCCCGGGCG CAGCTCGGCC CGCTGGCGCT GGCCGCGGTG 
GTGCCGGGCG GCACCGCGCT CGTGCCTTAT GAAAAGTTCG TGCTCCCCGC CGAGCTCGAC 
GGCAGCGCAG GCAGCAACCG CGCGCCGCGC GGGCAGTGCC TGCTGATGGC CACCAACGAC 
CACGAGGCCG TGGGCGCCTG GCTCAGCGCC AAGCGCGCGG GCGATGCCAC CGCCGACCTG 
TCGGCCACCC AGCGCGCCTA CCGCAAGGAG GCCGAGCGCC TGCTGCTCTG GGCCGTGCTG 
GAGCGCGGGA AGGCGCTGTC GTCGCTCACC GTCGAGGATG CGATCGAGTA CCGCGACTTC 
CTGCTCGATC CGCCCGCCCA CTGGTGCGGC GCGCGCCATC ACCAGCGCTG GTCGCCGCTG 
TGGCGGCCGA TGGAAGGGCC GCTCGCGCCC TCGGCGCTGC GCCAGGCCAT CGCGATCCTG 
CGCAGCCTGC ATGCGTTCCT GGTGAACCAG AACTATCTGG TGGGCAACCC CTTTGCCACG 
CTGGCGCCGC CCGCGAGCCT GCAGCAGCCG CTGGACTCCA GCCGCGCGCT GAGCTTCGCG 
CAGTGGGACC ACGTCGACGC GCTGCTCCAG GCACATGCCG ACACCGAAGC CAGGCGCCGG 
CTGCGGCGCG GCATGCGCTG GCTCTATGCG ACCGGCCTGC GGCTGGCCGA GATCACCAGC 
GCCAAGTGCG AGGACCTCGA ACAGATCGAG TACCGCGCGG CCGATGGCGC GCCGGCCACC 
GGCTGGCAGC TGGTGGTGGC CGGCAAGGGC GGGCGCTGCC GCCGGGTGCC GGTTCCGTCG 
GCGCTGGTGG CCGAGCTGGA AGACGAACTC GCCCGCCACG GCTTCGAGCG GCAGGTCGGT 
GCCGTGAGCA ACCGCGGCAT CCATGTGCTG GCGCGCTTCG ATGCCGAACT GCGCCGTCCG 
GCCGCCTGGT CGGCCTCGGG CCTGTACCAG GCGATCAAGG CCTTTGTCGC CCAGGCCGCG 
GCCAGCCTGC GCGGCACCGA GGCGCAGCAG CTCAAAAAAG CGAGCACTCA CTGGCTGCGA 
CACTCGCATG GATCCCACGC GCTGCGCGGC AGGGAAGGGC AGGTGCCGGT GCCGATCCAG 
GTCGTGCAGA ACAACCTCGG ACACGCCTCA GTGGGGACCA CGGCCATGTA CCTGGCCACC 
GCGCAGGTGC AGAGCCATAC CGAAATGCGC TAG 

 

Protein sequence

MKALIPRKLH RGHFAFMRAL AQGLDERASW DRYLRLEGEH TDLRTVRRTI AWIRDEFAAA 
ARREHKPGTA RLILLDADRF SAAPALPSLA EFAVANGLED FSESEQVEAY EAAYPAAGKA 
GQGARPSRRA RVVERQLEAL RWLENLVAQD PRPLDSVSAW LNPSVASRLE RAGLRTLHAL 
VEHINGIGSR WWVHVPGVGE LKAARILDWL RANEQVLGLR IGAHAMTPRA QLGPLALAAV 
VPGGTALVPY EKFVLPAELD GSAGSNRAPR GQCLLMATND HEAVGAWLSA KRAGDATADL 
SATQRAYRKE AERLLLWAVL ERGKALSSLT VEDAIEYRDF LLDPPAHWCG ARHHQRWSPL 
WRPMEGPLAP SALRQAIAIL RSLHAFLVNQ NYLVGNPFAT LAPPASLQQP LDSSRALSFA 
QWDHVDALLQ AHADTEARRR LRRGMRWLYA TGLRLAEITS AKCEDLEQIE YRAADGAPAT 
GWQLVVAGKG GRCRRVPVPS ALVAELEDEL ARHGFERQVG AVSNRGIHVL ARFDAELRRP 
AAWSASGLYQ AIKAFVAQAA ASLRGTEAQQ LKKASTHWLR HSHGSHALRG REGQVPVPIQ 
VVQNNLGHAS VGTTAMYLAT AQVQSHTEMR