| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6106 |
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| Symbol | |
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| ID | 7975552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 823393 |
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| End bp | 825564 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796662 |
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| Product | diguanylate cyclase/phosphodiesterase with extracellular sensor |
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| Protein accession | YP_002947936 |
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| Protein GI | 239820751 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAGCC TGCGGGTGGA GATCGCGCTT GGATTCGGCG TCGTCATTGT GCTGATGCTC
GCGTTGGGCG CGTCCTTCTA TCTGAGCGAA CAGCGTTCCG CGGCCGCCAT CGACAAGCTG
CTCAGCAGCG ACAACCGGAT GGCGGACCTG AGCTTGCGCA GCTCGCTGGC GATGTACAAG
GCCCGCGACG CCGAGAACGA ACTCCTGCTG TCCGCGGACC GGCTCGGGGT GGCGCAGGCG
AGCGAGCGCT CGCTGCCGGC CATGCAGAAC CATTTGCTGG ACATGCGGGA GTACCTTGCC
AGCCTTCGAA TCCTCTCGAC CGATCCGAAA TTCAGGGACC AGGTCGACCG GATCGAGACC
CAGACCCGGC AGTACGAGGA CGGCTTCCTC GCGTTCATTG CGCGGCATGG CAAGGAAGGC
CTTCCGGAAT CGGCCGATGC GCTGCGCCAA GGCTACCTGG CCACGGCCGT GGCCATCGAA
TCCTCGGTGG AGGCGCTGCA CACCGAGGCG ACCAAGCGCG CGCTCCAGAC GCGCAGCGAT
GTCGAACGCG CAGCCAGGTT CTCGCGCTGG GCGGTCATCG CGCTGGTCGC CCTGGCCATC
CTGCTGAGCG CGGCGGCCGC GACGGTCGTC TCGCGGCGCA TCACGGGCTC CATCGCCCGG
CTCGTCGCCT TTTCCGGGCG CGTCGCCGCG GGGGACTTCA GTGCCAGGAC GCCGCAGGGC
CACGCGGATG AATTCGGCAT CCTCGCGAGC GCCATGAACC AGATGGCTGA GTCGATCGAG
AATTCCAACG CGCTGCTGGA GAGCAGCGCC GACACCCTGA AGCACCAGGC CACCCACGAC
CCGCTGACCG GGCTGCCGAA CCGCGCATTG CTGGAGGACC GCCTGCGGCA GGCCATCTCG
TATGCCGATC GCTACGGCCG GCTGATGACG GTGGTGTTCA TCAACCTGGA CGGCTTCAAG
CGGATCAACG ACAGCCTGGG CCGCAAGGGC GGCGACGAAT TGCTGAAGGT CATGGCCGAG
CGCATGGCCC GGTGCCTGCG CAGCGTGGAC ACGGTGGTGC GAACGGGCGG CGATGAATTC
GTGATCATCC TGTACGACCA GCCCGGCGAC GGAACAGACA TCGCACCAGC CCTGAGAAAG
CTGCTCGAGA CCATCGCGCA GCCAGCGCGC ATCGGCAGCC AGGCGGTCCA GCTCACGGGC
AGCATGGGCG TGGCCACCTA TCCCGCGGAC GGCGCCGATG CCGACGCCCT GCTCGTGAAC
GCCGACGCCG CGATGTCCCA CGCCAAGGCC TCGGGGCGCA ACAACTTCGA GTTCTATGCG
GCCGAGATGA GCGGCGCGAT CCGCGACGAA CTCGCGCTGC GCGAAGGGCT GCGCCATGCC
GTCGCGCGCA GCGAGTTCCA CCTCGCGTAC CAGCCGCAGC TGGACATGGA ATCGGGCCGG
GTGACGGGCG TGGAGGCATT GATCCGCTGG CAGCATCCGG AGCGCGGCCT GGTCTCGCCG
GCGCAGTTCA TCCCGCTGGC GGAAGAGACC GGCCTGATCG TTCCGATCGG CGAATGGGTG
CTGCGCACCG CCTGCTTCCA GAACAAGGCT TGGCAGGACG CGGGCCTGCC GCCGTTCATC
GTGTCGGTCA ATGTGTCGGC GCGCCAGTTC CGGGAGCGGA CCCTGATCGC GCAGGTGGCC
CTGGCGCTTC GGGACAGCGG GCTCGAGCCC CGCCTCCTGG AGCTGGAACT GACCGAAAGC
CTGGTCATGG AGGACCTGGA CAAGGCGCTG CAGTCGATGA AGGCCCTGCG CGCCATGGGC
GTGCAGCTCT CGATCGACGA CTTCGGCACC GGCTATTCGA GCCTGAGCGC GCTCAAGCGC
TTTCCCATCG CGAGGCTCAA GATCGACCAG TCCTTCGTGC GCGACATTCC GGGCGACGAA
GAGGACAAGG CGATTGCCAA GACCATCATC GCGCTGGGGC ACGAGCTCAA TCTCAAGGTC
ATTGCCGAAG GGGTCGAGAC CGAGCAGCAG CTGGAATTCC TGCGCGCCCA TGGGTGCGAC
GAGATGCAGG GCTATCTCTT CAGCCGGCCC GTGCCGCCCG CCGAACTGGC GGCACTGGTC
AGGATGCGCG CTGGCGAGGC AGCGGCGAGC GGCCAGCCCG AGGCGCGTGC GCGCCGCGTG
GCGGGACGCT GA
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| Protein sequence | MRSLRVEIAL GFGVVIVLML ALGASFYLSE QRSAAAIDKL LSSDNRMADL SLRSSLAMYK
ARDAENELLL SADRLGVAQA SERSLPAMQN HLLDMREYLA SLRILSTDPK FRDQVDRIET
QTRQYEDGFL AFIARHGKEG LPESADALRQ GYLATAVAIE SSVEALHTEA TKRALQTRSD
VERAARFSRW AVIALVALAI LLSAAAATVV SRRITGSIAR LVAFSGRVAA GDFSARTPQG
HADEFGILAS AMNQMAESIE NSNALLESSA DTLKHQATHD PLTGLPNRAL LEDRLRQAIS
YADRYGRLMT VVFINLDGFK RINDSLGRKG GDELLKVMAE RMARCLRSVD TVVRTGGDEF
VIILYDQPGD GTDIAPALRK LLETIAQPAR IGSQAVQLTG SMGVATYPAD GADADALLVN
ADAAMSHAKA SGRNNFEFYA AEMSGAIRDE LALREGLRHA VARSEFHLAY QPQLDMESGR
VTGVEALIRW QHPERGLVSP AQFIPLAEET GLIVPIGEWV LRTACFQNKA WQDAGLPPFI
VSVNVSARQF RERTLIAQVA LALRDSGLEP RLLELELTES LVMEDLDKAL QSMKALRAMG
VQLSIDDFGT GYSSLSALKR FPIARLKIDQ SFVRDIPGDE EDKAIAKTII ALGHELNLKV
IAEGVETEQQ LEFLRAHGCD EMQGYLFSRP VPPAELAALV RMRAGEAAAS GQPEARARRV
AGR
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