| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6105 |
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| Symbol | |
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| ID | 7975551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 822324 |
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| End bp | 823316 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796661 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002947935 |
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| Protein GI | 239820750 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CAATCCTGAT GCTCGCCGCG ACATGGGGCT TCGCTGCCCT GCCGCCGGCG
GCGCATGCCG ATCCCGTGGT GCTGTCGCTG GTGCACGCCG CCACCACCTC GCACCCGGCC
CATCTGGCGG CGCTCCAGTT CGCCAAGCGG GTCGAGGAGC GCACCCACGG GCAGGTCCGC
ACGGAGATCT TTCCCGCGTC CCAGCTCGGC AGCGAGAACG AACTGCTGCA GAAGGTCCGG
CTGGGCGCGG TCGACATGGA CGTGACCTCG ATGAACTACC TCATCAAGTA CGAGAAGACG
TTCTCCGTCG TCGTCATGCC CTATCTCTTC GACAGCTATG CGCATGCCCA CCGCGTGCTC
GATGGCCCGG CAATGAACTG GCTCGCGCCG CTGGCCGAGA AGCAGGGCTT CGTCATCCTG
TCCAACTGGG AATGGGGATT CCGCAACATC ACCAACAACC AGCGCCCGAT CAACCTGCCC
GAAGACGTGC GGGGCCTCAG GGTGCGCGTT CCGCCCGTCG CCGAACTCGA GGCCACCATG
CAGGCGCTGG GCGCCGAGGT CAGCAAGGTC GGCTTCAAGG AGCTTCCCCA GGCGCTGTCG
CAGGGCCTGG TCGACGGCCA GGAGAACCCG CTCAACGTCA TCTACTACAA CAAGCTGTAC
GAAGTGCAAA AGCACCTCGC CCTGACCCGC CATGTGTACT ACAACACGCT CCACCTCATG
AGCACCAGGA CCTGGGCGAA GCTCACGCCG GCCGAGCAGG CGATCGTGCG CGAAGAGAGC
AAGGCGGCAG GCGACGGCAT GCGCAAGAAG ATCATTGCCG AAGAGGAGGA GCTGATCGCA
AAGATGGTTG CCGCCGGCGT GAAGGTCACG CGCCCCGACC CGGCGCCGTT CCGCGCGGCC
ACCCAGGGCG CCCGCGAGGA GATCAGGCGC TTCGCGGGCG ACGAGAACGT GCGCACGTTC
CTGAAGATGG TCGACGCAGA GCGAAAGCAG TGA
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| Protein sequence | MKKTILMLAA TWGFAALPPA AHADPVVLSL VHAATTSHPA HLAALQFAKR VEERTHGQVR
TEIFPASQLG SENELLQKVR LGAVDMDVTS MNYLIKYEKT FSVVVMPYLF DSYAHAHRVL
DGPAMNWLAP LAEKQGFVIL SNWEWGFRNI TNNQRPINLP EDVRGLRVRV PPVAELEATM
QALGAEVSKV GFKELPQALS QGLVDGQENP LNVIYYNKLY EVQKHLALTR HVYYNTLHLM
STRTWAKLTP AEQAIVREES KAAGDGMRKK IIAEEEELIA KMVAAGVKVT RPDPAPFRAA
TQGAREEIRR FAGDENVRTF LKMVDAERKQ
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