| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6104 |
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| Symbol | |
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| ID | 7975550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 820060 |
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| End bp | 822327 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796660 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002947934 |
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| Protein GI | 239820749 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAC CGCAGAACCG CCGCATCCTG CTGGCTGACG ACACGCCGGC CATCCACGAG
GACTTCCGCA AGATCCTTCT TCCGGCGGCC GCGGACGCGA ACCTGGACGA CCTGGAGTCC
GCGCTGTTCG GAACCTCGGC CAGGAAAAGC GACGTGGACT TCGTGCTGGA CAGCGCCTAC
CAGGGCGAGG AGGCGCTCGC CAAGCTGCGC GAGGCATTGG CGGCCGAGGC GCCCTACGCC
ATGGCGTTCA TCGACATGCG CATGCCCCCC GGGTGGGACG GCGTCAAGAC CATCGAGCAG
CTGTGGCTCG AAGACCCGCG CCTGCAGATC GTGATCTGCA CGGCCTATGC GGACCAGTCG
TGGGTCGAGG TGTTCGATCG GCTGGACGCG CGCGACCGCC TGCTGGTGCT CAAGAAGCCC
TTCGATCCAA TCGAGGTGCG CCAGCTGGCC AGCGCGCTCA CCATGAAGTG GCAGATGACG
CAAGACGCCG CCTTCAAGAT GAACCAGCTC GAGCAGGCCG TGGAGGAACG CACGCGCGAG
CTGTCGGACG CCAACATCAT CGTGCAGAAC AGCCCGACCA TTCTCTACCG GCTGCGCGGC
GAGCCGGCGT TCCCGCTGAT CTACATCTCG CACAACATCA CCAAGTTCGG CCACGAACCG
GCGGCCCTCC TGGCCAACCC GGACTGGGCG GACGTGCTGA TCGACCCGGC CGACCAGCCC
GGCGTGGCCG CCGCGATGGC GCGCGTGCTC GAAAAGGACG CCGAAGGCGC CTCCATCGAA
TACCGCCTGT GCACCGGCGA CGGCGCGCGG CGCTGGGTCG AGAACCGTTA TGTTCCGGTG
CGCGACAAGG ACGGCCGGCT CATCGAGGTC GAGGGCATCG TCATCGACGT CACCGAGCGC
AAGGCGGCGG AGGAGCAACT GGCAAAGCTG GCGCGCACCG ACGGGCTCAC GGGCCTGGCC
AACCGCGCCA CCCTCGTCGA GCGCCTGCAC CAGGCCCACG CGGCGGCACG GCGCGGCTCC
GTGCCGTTTG CGCTCCATTG CCTCGACCTG GACCACTTCA AGCCGGTCAA CGACATGTTC
GGCCATCCGG GCGGCGACCT GCTGCTGCGC GAGGTGGCGC TGCGCCTGAA GAACTGCACG
CGCGAGACCG ACGTGGTGGC GCGCCTGGGC GGCGACGAGT TTGCCGTGCT GCAAAGCGAA
ATGGCCGACG CGGCCGCCGC GGGCGCCCTG GCCGCGAAGA TCCAGCAGGA GCTGGCGCGC
CCGTACATGA TCGATGGCAA CCAGGTGCAT GCCTCGGCCA GCATCGGCAT CTGCCCCTAC
ACCCCGGGCA GCGAGAGCCC GGAGGAAATG CTCGCGCAGG CCGACCTGGC GCTCTACCGC
TCGAAGGAGC AGGGGCGCAA CCAGTACCAC TTCCATTCCG AGGAACTCGA CTTCGAAGTG
CGCGACCGCG TGGCGCTCGG CGAAGACCTG AAGCAGGCCA TCGAGCGCGA ACAGCTGGAG
CTTTATTACC AGCCGCAGGT CGAGCTGTCC TCCGGAAAGA TCGTGGGCGT GGAGGCGCTG
CTGCGCTGGA ACCACCCCAG GCGCGGCCTG CTCGAGGCGA ACGCGTTCGT GCCGATTGCC
GAGCGCACCG GCGGCATCGT CGCGCTCGGC CGCTGGGTGC TGGACCAGGC CTGCAGGCAG
ATGAGCCTGT GGCGCGAACA GGGGGTGGCG CCGCCGGTGG TGGCCATCAA CCTGTCGCTC
GGGCAGCTCA GGCAGGGCAG CGAACTGATC CGCGACGTGA CCGAGGGCCT CGCGAAATGG
CGGCTCGAGC CGTCCGTGCT GGAGTTCGAC GTGACGGAGT CGACGCTGGC CCAGATGACA
TGGACCCACA ACGACGTGCT GCCCAGGCTG AGGGCGCTCG GCGTGCGCAT TGCAATCGAC
GACTTCGGCA CCGAATACTC GTCGTTCGAA TACCTGCGCA CCTACCGCGT GAACCATCTG
AAGATCGCGC AGTCGATGCT CAAGCGGGCG ATCGACGACC CGGACAGCGC GGCCACGGTT
CGCGCCATCA TGAATCTCGC GCGCGAAGCG CGCATCGGCA TCATCGTCGA GGGACTGGAG
ACGCAGACAC AGCTCGCCTT TCTCCAATCG ACCGGCGCCA CCACGCTGGC GCAGGGCTAC
TACTTCAGCG AGGCCGTGAT GGCCACCGAG GCCGGCGACT TCCTGCGCTC GGGTACCATG
GCGCAGAGCG AACGCAGCAA GGGCGGAGAG CACGGGGCCG CAGCATGA
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| Protein sequence | MSKPQNRRIL LADDTPAIHE DFRKILLPAA ADANLDDLES ALFGTSARKS DVDFVLDSAY
QGEEALAKLR EALAAEAPYA MAFIDMRMPP GWDGVKTIEQ LWLEDPRLQI VICTAYADQS
WVEVFDRLDA RDRLLVLKKP FDPIEVRQLA SALTMKWQMT QDAAFKMNQL EQAVEERTRE
LSDANIIVQN SPTILYRLRG EPAFPLIYIS HNITKFGHEP AALLANPDWA DVLIDPADQP
GVAAAMARVL EKDAEGASIE YRLCTGDGAR RWVENRYVPV RDKDGRLIEV EGIVIDVTER
KAAEEQLAKL ARTDGLTGLA NRATLVERLH QAHAAARRGS VPFALHCLDL DHFKPVNDMF
GHPGGDLLLR EVALRLKNCT RETDVVARLG GDEFAVLQSE MADAAAAGAL AAKIQQELAR
PYMIDGNQVH ASASIGICPY TPGSESPEEM LAQADLALYR SKEQGRNQYH FHSEELDFEV
RDRVALGEDL KQAIEREQLE LYYQPQVELS SGKIVGVEAL LRWNHPRRGL LEANAFVPIA
ERTGGIVALG RWVLDQACRQ MSLWREQGVA PPVVAINLSL GQLRQGSELI RDVTEGLAKW
RLEPSVLEFD VTESTLAQMT WTHNDVLPRL RALGVRIAID DFGTEYSSFE YLRTYRVNHL
KIAQSMLKRA IDDPDSAATV RAIMNLAREA RIGIIVEGLE TQTQLAFLQS TGATTLAQGY
YFSEAVMATE AGDFLRSGTM AQSERSKGGE HGAAA
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