| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6086 |
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| Symbol | |
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| ID | 7975532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 804261 |
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| End bp | 805601 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796642 |
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| Product | HipA N-terminal domain protein |
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| Protein accession | YP_002947916 |
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| Protein GI | 239820731 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCGCA CACGGGGCCT GCAGGCCCTT TCCATCTGGG CCAACGGTGA ACGGGTCGGC
AGCTGGCGCA TTCCCGCGCA CGGGGCGGAC GAACTGCGCT ATGACGATGC CTGGGCCGAT
TCGCCCGCCG GGCGCCCGCT CTCGCTTTCG TTGCCGCTGG TGCGCGGCTT CACCCACAAG
GGCGCGGTCG TCAGCAACTA CTTCGACAAC CTGCTGCCGG ACAGCCTGCC CATACGCCAG
CGCATCGCGA GCCGCTTCGG CACGCAGACG ACGCAGGCCT TCGACCTGCT GCAGGCGATC
GGCAGGGATT GCGTGGGCGC CATCCAGCTG CTGGGAGAGA ACGCCAGCCC GGCCGATGTG
GAACGCATCG AGGGCGAACC GATGAGCGAA GCCGGCGTCG AGCGGCTGCT GCTGCAGACG
GTCGATCCGG GCAGGTTCGC CGCGCAGGCC GTGCCTGGCG ACGAACTGCG CATCTCGCTG
GCCGGCGCCC AGGAGAAAAC CGCGCTTCTG TGGCACGAGG GCCAGTGGCT GCGCCCGCAG
GGCTCGACCC CCACCACGCA TATCCTGAAG CTGCCCTTGG GCCTGGTCGG CCATCGCAAG
GCCGACTTCA GCACCTCGGT GGAGAACGAG TGGCTCTGCC TGAACATCCT CCAGGCGTAC
GGCCTTCCCG TGCCCCGCAC CGCGATGCTC CGGTTCGGTT CGCAGAAGGT GCTGGCCGTC
GAGCGCTTCG ACCGCCGGCT GCACTCCTCC GGAAACTGGT GGCTGCGCCT GCCGCAGGAA
GACTTCTGCC AGGCCCTCGG CAAGCCGTCG CACCTGAAAT ACGAAGCGGA CGGCGGACCG
GGAATGACCG ACCTCGCCGA CGTGCTGCGC AACTCAGTCA ACGCCCAGGA AGACCTGGCA
ACGCTCCTCA CCGCGCAGCT GCTCTTCTGG ATGCTGGGCG CGCCCGACGG GCATGCCAAG
AACTTCAGCA TCGCCTGGCT CCCGATGGGC CGCTACAGGC TGACGCCCCT CTACGACGTG
ATGTCCATCT GGCCCCTGGA AGGCAACGGC CCGAACCAGT TTTCCAGGCA CGAGGCCAAG
CTCGCGATGG CCTTGTCCGG CAAGAGCAGG CACTACCACT TCAAGACCAT CCAGCGGCGC
CACTTCAACG CCATGGCACA GAAGTGCCAC TACGACCCGG ATGCCGAGAA CATCATCCAG
CGCGTGCTGG CGGCAACGCC CGGCGTGATC GATCGGATCG CCGCGCGCCT GCCCGCGCAG
TTTCCGGTAG CGGTGTCGGG CCGGATCCTC GAAGGGCTCG CCCGCTCCGC GAGGGCGCTG
AAGGGAATGC CGCCCGTCTA G
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| Protein sequence | MARTRGLQAL SIWANGERVG SWRIPAHGAD ELRYDDAWAD SPAGRPLSLS LPLVRGFTHK
GAVVSNYFDN LLPDSLPIRQ RIASRFGTQT TQAFDLLQAI GRDCVGAIQL LGENASPADV
ERIEGEPMSE AGVERLLLQT VDPGRFAAQA VPGDELRISL AGAQEKTALL WHEGQWLRPQ
GSTPTTHILK LPLGLVGHRK ADFSTSVENE WLCLNILQAY GLPVPRTAML RFGSQKVLAV
ERFDRRLHSS GNWWLRLPQE DFCQALGKPS HLKYEADGGP GMTDLADVLR NSVNAQEDLA
TLLTAQLLFW MLGAPDGHAK NFSIAWLPMG RYRLTPLYDV MSIWPLEGNG PNQFSRHEAK
LAMALSGKSR HYHFKTIQRR HFNAMAQKCH YDPDAENIIQ RVLAATPGVI DRIAARLPAQ
FPVAVSGRIL EGLARSARAL KGMPPV
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