| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6085 |
|---|
| Symbol | |
|---|
| ID | 7975531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 804001 |
|---|
| End bp | 804258 |
|---|
| Gene Length | 258 bp |
|---|
| Protein Length | 85 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644796641 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_002947915 |
|---|
| Protein GI | 239820730 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.815218 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAGG TCCTTTCGGT TCCCTCCCAG CTCGGCGCGC TGCTCAAGGC CGCGCGCAAG
GAAGCGGGCA TTTCGCAGGT CAAGCTGGCC GAGCGGCTCG GCATCAGCCA GAGCCGGATG
TCCCACATGG AACTCAACCC TGGCTCGCTG AGCCTGGAGC AGCTGCTGGC CATCTTCGGC
GTGCTGGGCC TCGAGATGGT GGTGGGCTCC AGGAAGCCCG CGCCCACCGG CAGCCAGGCA
GCTTCCCAGG AGTGGTGA
|
|---|
| Protein sequence | MQQVLSVPSQ LGALLKAARK EAGISQVKLA ERLGISQSRM SHMELNPGSL SLEQLLAIFG
VLGLEMVVGS RKPAPTGSQA ASQEW
|
|---|
| |