Gene Vapar_6083 details

Gene Information

• Locus tag: Vapar_6083
• ID: 7975529
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 802328
• End bp: 803032
• Gene Length: 705 bp
• Protein Length: 234 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644796639
• Product: short chain dehydrogenase
• Protein accession: YP_002947913
• Protein GI: 239820728
• COG category: [R] General function prediction only
• COG ID: [COG0300] Short-chain dehydrogenases of various substrate specificities

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGATCG AAAATTCCGT CGCTCTCGTC ACGGGCGCCA ATCGCGGCAT CGGCCTGGCA 
TTCGCGCGTG AGCTGCTGGC CCGCGGCGCC CGCAAGGTTT ACGTGGGCGC CCGCAACCCT 
GAAACCGTGA CCCAGGCCGG CGTCCAGGCG CTGCGCCTGG ACGTCAACAA TCCGCAAGAC 
GTGGCGGCTG CCGCGGCGCT GGCGTCCGAT GTGACGCTGG TGGTCAACAA CGCCGGCATT 
GCCCAGGCGG GCGGCTTTCT CGCGGCCGAC AGCGAAGAGG TCGCACGGCA AATCTTCGAA 
ACCAATTTCT TTGCCGTGCT GCGCATGAGC AAGGCCTTCG CGCCCATTCT CAAGGCCAAT 
GGCGGCGGCG CGCTGCTCAA CGTCCTGTCG ATTGCCTCGT GGGTGAACGG CGGCGAGCTG 
GCGGCCTATT CGGCCAGCAA GTCGGCCGCG TGGTCGCTTA CCAATGCCCT GCGCAGCGAA 
CTGTTGGCGC AGAAGACGCA GGTGCTGGCG CTGCACATGG GCTATGTCGA TACCGATCTC 
ACGCGCGGCT TCGATGTGCC GAAGACGAGC CCTGAAGACA TCGTGAAGCG TGCGCTCGAC 
GGGCTCGAGT CGGGCCTCGA CGAGGTGCTG GCCGACGAGC TCACGCAGCA GGTCAAGCAA 
GGGATGACGG CGCCCAGGCC CAGCTACCTT CCGCAGGTGG CCTGA 

 

Protein sequence

MKIENSVALV TGANRGIGLA FARELLARGA RKVYVGARNP ETVTQAGVQA LRLDVNNPQD 
VAAAAALASD VTLVVNNAGI AQAGGFLAAD SEEVARQIFE TNFFAVLRMS KAFAPILKAN 
GGGALLNVLS IASWVNGGEL AAYSASKSAA WSLTNALRSE LLAQKTQVLA LHMGYVDTDL 
TRGFDVPKTS PEDIVKRALD GLESGLDEVL ADELTQQVKQ GMTAPRPSYL PQVA