Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6076 |
Symbol | |
ID | 7975522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 796808 |
End bp | 797452 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644796632 |
Product | FMN-binding negative transcriptional regulator |
Protein accession | YP_002947906 |
Protein GI | 239820721 |
COG category | [K] Transcription |
COG ID | [COG2808] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTACGTCT CCAAGCACCA CGCGCTGCCC GAGCCCGCCG AAGCCCAGGC ACTGATCGAG GCCCACCCGC TGGGCGCATG GGTCGTGCCC GGCCGCGAAG GCCTGGTCGC CAACCATGTG CCCTTCCTGC TGGACAGGTC GCGCGGCCCG TTCGGAACAC TGATGGGCCA TGTGTCGCGT GCCAATCCGG TGTGGAAGCT GCTGCCTGCC GCAGCGCATT CGGCGGTCAT GTTCCAGGGC CCGCAGTCCT ACATCACGCC CGGCTGGTAT CCGGGCAAAC AGGCGCACGG AAAGGTCGTG CCGACCTGGA ACTACGCGGT CGCCCATGCG CACGGCGCGG CGCGGGCCAT CGACGACGAA CACTGGCTGC GCGGCATGCT GACGCGCCTC ACGGCCGCCC ATGAGTCCTC GAAGCAATTG CCCTGGCAGA TGACGGACGC GCCGGCGGAT TTCATCGACA GGATGCTGCG TGCCGTGGTG GGCATCGAGA TTCCGATCGA GCGCTTGGTC GGCAAGCTCA AGGCGAGCCA GGACGAGGAC CTGCAGGACC GGTGGGGCAC CGTGAGCGGG CTGGCCGCCG AAGGCACCGA GAACGCGGCG GCGATGGCGC GCCTCGTCGA ACGTGCCGCC CGGCAACAGC GCTGA
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Protein sequence | MYVSKHHALP EPAEAQALIE AHPLGAWVVP GREGLVANHV PFLLDRSRGP FGTLMGHVSR ANPVWKLLPA AAHSAVMFQG PQSYITPGWY PGKQAHGKVV PTWNYAVAHA HGAARAIDDE HWLRGMLTRL TAAHESSKQL PWQMTDAPAD FIDRMLRAVV GIEIPIERLV GKLKASQDED LQDRWGTVSG LAAEGTENAA AMARLVERAA RQQR
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