| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6065 |
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| Symbol | |
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| ID | 7975511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 785941 |
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| End bp | 786810 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796622 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_002947896 |
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| Protein GI | 239820711 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.152914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATCG CCACTTTCAC GAGCGAAGGT CACCGCAAGG TCGGCCTCGT CTCCGCAGAC
GGGAAGACCG TCACCCCACT GGAACTCACG CAGGCCCAAG CCGACAGCGG CGTACTGACG
CTGATCGAAG CCCTGGCCGA GGGCGGCTCG CTTCCGGAGG CTGCCGGTCC GGCCGTCAAC
CTGGGCGATG TGGTGCTCGA TGCGCCGTTG CCCAAGCCGC GTCGCAACCT CTGGTGCGTG
GGCCGCAATT ACCACGCGCA TGCCAAGGAA CTGGCTGCCT CCGTGTTCAA GGACAACATG
GCCAAGACCG ACGACTGGCC CATCGTCTTC ACCAAGGTGC CTGAGTGCGT CGTGGGCCCG
CATGACGACG TGCTCGTGCC TTCCGAGGTG TCCACGCAAA TCGACTACGA GGCCGAACTG
GCGGTGGTCA TCGGCAAGGG CGGCAAGAAC ATCACGCGCG CCGCTGCGAT GTCGCACGTG
TTCGGCTACA CGGTCGTCAA CGACGTGACC GCGCGCGATG TGCAGATGCG CCATGGGCAA
TGGGATCTGG GCAAGTCTTT CGACACTTTC TGCCCCATGG GCCCGTGGAT CGTTACGGCC
GACGAGTTCG ACGGCACCAA GACGCGCGTG CGCTGCTGGG TCAATGGCGA GCTGCGCCAA
GACGGCCCGA CCGAGAACAT GATCTTCGAC ATCCCCACGT TGATTGAGAC TATCTCGCGC
GGCATCACGC TGTACCCCGG CGATGTCATC GCTACCGGCA CGCCGGCTGG CGTGGGCATG
GGCATGAGCC CGCCGCGCTA CCTGCGCGCG GGCGACGTGG TGCGTGTGGA GATCGATCGG
CTGGGCGCCA TCGAGAACAA GTTCGTCTGA
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| Protein sequence | MRIATFTSEG HRKVGLVSAD GKTVTPLELT QAQADSGVLT LIEALAEGGS LPEAAGPAVN
LGDVVLDAPL PKPRRNLWCV GRNYHAHAKE LAASVFKDNM AKTDDWPIVF TKVPECVVGP
HDDVLVPSEV STQIDYEAEL AVVIGKGGKN ITRAAAMSHV FGYTVVNDVT ARDVQMRHGQ
WDLGKSFDTF CPMGPWIVTA DEFDGTKTRV RCWVNGELRQ DGPTENMIFD IPTLIETISR
GITLYPGDVI ATGTPAGVGM GMSPPRYLRA GDVVRVEIDR LGAIENKFV
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