Gene Vapar_6034 details

Gene Information

• Locus tag: Vapar_6034
• ID: 7975319
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 758743
• End bp: 760722
• Gene Length: 1980 bp
• Protein Length: 659 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644796594
• Product: histidine kinase
• Protein accession: YP_002947868
• Protein GI: 239820683
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4585] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.717786
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACCAT CCCGCGTTGC CCTTGGCCGG TGGACCGCAA CGCTGTGGCT CGCCCTGCCC 
TTGGCCCTGC TGCCCTGTGC GAGCACCGCC GGCGCACCGG CCACGGATGC GGCGCCGCAG 
CAGGGCGGCG CGGTCCAGAT CACGCGGGCC GAACTGCTGT CCGTTCCCGG CACGGGCTAT 
TCGGCTCCGC CGCGGCGCAT CGAGGACGCC GGCCTGCCGC GCGAGGGATG GCAGACGGTC 
GACCTGCCGC GCACGGCCGC GCGCGAGCTG GTGCCCACGC CGGCCGGCAG TGTGCGCACC 
GTCACCGACT GGTACCGCAT CGACCTGTCC GGGCTGGCGC CACCGGCGCG GCAGCCGCTG 
CTCCTGTACC TGCCGCGCTG GAAGACCCTG GGCCGCATCG CGGTGTACGG CGATGGCGTG 
CTGCTCTACC AGTCGCAGGG CAGCGCGGTG CACAACGGCT ACAACCATCC GCTGCTGTTG 
CCGCTGAATG CGGCGGCGAA CACGCCGTCC CCGGCGTCGG TGCTGATCCG CGTCGACCGC 
CTGCCCAGCA GCGGGAGCGG GTTCTCCACC GTGTGGGTGG GCGGCGAGGG TTCGCTGAGC 
TGGCGCTACC TGCTGCGCCA GCTGCTGCAG GTGCAGCTGC CGTTCATGGG CAGCGCGGCC 
TTCCTGGCGG TGGGTGCCTT TGCCTTCGCG GTGTGGCTGG GCAAGCGGCG CGAATCGCTC 
TACCTGCTGT TCTTCGCCAT TTCGGCAATG GCCTTCCTGC GCATGCTGCA CTACTTCGTG 
AGCGGCGACT ACCTGCTGGT CTCGGACGAG TGGTTCGAAT GGATCACCGT GGCTTCGCTG 
CTCTGGCTGA TCATCCTCAT CCACCTGTTC CTGCAGCGCC TGCACCAGCA GCCCTCGCGC 
TGGCTCACGC GCTTGTCGGT GGGGCTGGCG CTGGCCTGCA GCATGGCGAC GCTGCCCCAT 
GTGTCCAGGG CGATACCCAG CCTCTACCTC TTCACGCCGC TGCTCAACCT GGCGGTGCTG 
CCCGTCACGG TGCTGATCTT CGCGGTGAAC CTGCGCAAGG CGCTGCGCGC CAAGTTTCCC 
GAGGGGCGGC TGGTGGCGGG CTGGGCCGTG CTGGCGCTGG CCTTCACTTC CTACGACGGG 
CTGCTGCAGA ACAACTTGGT AAGCCCGGAG AGCGTGTACA CCTCGCCCTA CGCCATCATC 
AGCCTGTTCT TCATCTTCTC GTACATCATG TTCCAGCGCT ACACGGGCGC CTTCGCCGAA 
GTGGCCCGGC TGAACAAGGG CCTTGCCCAG CGCCTGCAGG CGCGCGAGGC CGAGCTGGAG 
CAAAGCTACC AGCGGCTGCG CGTGATCGAG AACGAGCAGA TGCTCGGCGC CGAGCGCCGG 
CGCCTGATGC AGGACATGCA CGACGGGCTC GGCTCGTCGC TGATCAGCGC GATCCGGTCG 
GTGGAGCAAG GCGCCATGAG CGGCACCGAG ATCTCGGGCG TGCTCAAGGG CTGCATGGAC 
GACCTGAAGC TGGCCATCGA TTCGATGGAG AGCGTGGACG CCGACCTGCT GCTGTTGCTG 
GCCACCCTGC GCTTTCGCCT GGCGCCGCGC ATCGAGAGCG CCGGCGTCGC GCTGCGCTGG 
GAAGTGCAGC CGGTACCCGC GCTGTCCTGG CTGGACCCGG GCGGCGCACT GCACATCCTG 
CGCATCATGC AGGAGTGCGT GGCCAACGTG CTGCGCCACA CGCGGGCCAC CATCATCCGC 
TTCAGCACGG CGACGGACGG CCATGGCGTC TGCGTGGTGA TCGAGGACAA CGGCGCGGGC 
TTTGCCGTGG AGGAAGCCCT GCGCCGAAGC GGCCGCGGGC TGCGCAACCA GCAGCGGCGC 
GCCCTGGCCA TCGGCGGCAC GGTGCGCTGG GAATCGGGCA GCGGCGGGAC GCGCTTCACG 
CTCTGGCTGC CCCTGCACCA TGGGGAGGGT GCCGACAGCA AGACCATGAG CGCCGCCTGA 

 

Protein sequence

MKPSRVALGR WTATLWLALP LALLPCASTA GAPATDAAPQ QGGAVQITRA ELLSVPGTGY 
SAPPRRIEDA GLPREGWQTV DLPRTAAREL VPTPAGSVRT VTDWYRIDLS GLAPPARQPL 
LLYLPRWKTL GRIAVYGDGV LLYQSQGSAV HNGYNHPLLL PLNAAANTPS PASVLIRVDR 
LPSSGSGFST VWVGGEGSLS WRYLLRQLLQ VQLPFMGSAA FLAVGAFAFA VWLGKRRESL 
YLLFFAISAM AFLRMLHYFV SGDYLLVSDE WFEWITVASL LWLIILIHLF LQRLHQQPSR 
WLTRLSVGLA LACSMATLPH VSRAIPSLYL FTPLLNLAVL PVTVLIFAVN LRKALRAKFP 
EGRLVAGWAV LALAFTSYDG LLQNNLVSPE SVYTSPYAII SLFFIFSYIM FQRYTGAFAE 
VARLNKGLAQ RLQAREAELE QSYQRLRVIE NEQMLGAERR RLMQDMHDGL GSSLISAIRS 
VEQGAMSGTE ISGVLKGCMD DLKLAIDSME SVDADLLLLL ATLRFRLAPR IESAGVALRW 
EVQPVPALSW LDPGGALHIL RIMQECVANV LRHTRATIIR FSTATDGHGV CVVIEDNGAG 
FAVEEALRRS GRGLRNQQRR ALAIGGTVRW ESGSGGTRFT LWLPLHHGEG ADSKTMSAA