| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6027 |
|---|
| Symbol | |
|---|
| ID | 7975312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 751032 |
|---|
| End bp | 751598 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796587 |
|---|
| Product | transcriptional regulator, CadC |
|---|
| Protein accession | YP_002947861 |
|---|
| Protein GI | 239820676 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0284754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACGAAC GGCAACCACC AGCCAATGAG CGAGATCCGC TCGCATCCGC AAGCTTGCGG
GGCCGAGCCG GAGTCGCAAC AGCGGTTCAG TTCGCGGGCT TCGAGTTCGA CTTCGAACGC
GGCCAGCTTC GCCAGGGTGG CACGCTGATC CCGCTCAGCC CCAAGCCCGA TGCGCTGCTG
CGCTTCTTCC TCGCCAATCC CCAGCGCCTC ATCGGCAAGA CGGAGTTGAT GGACAGCCTG
TGGCCGGACG TGGTGGTCAC GCACGACTCG CTCGTGCATT GCATCGGCGA ACTGCGCAGC
CGCCTGGGCG ATCACGGCGC GACATTGATT GCGACATCGC CGCGGCGCGG CTACATGTTC
GACGCCGAGG TGCTGCCCGT GCAGCTCGAT CGCGCGGATC CACCCGCGCG CCGGCCGCAA
GCAGCGGCGG CGCCGGTGCA GCGGAGCCGA TGGCTCTCGG TCGCCGCGCC GCTGTGCGTC
AGTGCGATCG GCATTGCCCT CGCGATCTAC ATGGCGTCGA CACCCAGGCC GCGGCGCAGA
TCGCCGGGCA AGCTTCCATC ACGCTGA
|
|---|
| Protein sequence | MYERQPPANE RDPLASASLR GRAGVATAVQ FAGFEFDFER GQLRQGGTLI PLSPKPDALL
RFFLANPQRL IGKTELMDSL WPDVVVTHDS LVHCIGELRS RLGDHGATLI ATSPRRGYMF
DAEVLPVQLD RADPPARRPQ AAAAPVQRSR WLSVAAPLCV SAIGIALAIY MASTPRPRRR
SPGKLPSR
|
|---|
| |