| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6024 |
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| Symbol | |
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| ID | 7975309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 748546 |
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| End bp | 749601 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796584 |
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| Product | ribosomal RNA large subunit methyltransferase N |
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| Protein accession | YP_002947858 |
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| Protein GI | 239820673 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0820] Predicted Fe-S-cluster redox enzyme |
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| TIGRFAM ID | [TIGR00048] radical SAM enzyme, Cfr family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0838291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATCC ACGAACTGAA ACAGCGGCTG CGGGAAGCCG GTGCAGGCCC CAGCCACGAG
CAGCGCATCC TGCGGCTGTG GTCCCACGCA CTGCCGCGCA ACAGCGGCCG GCGCCTGCCG
GAGAGCTTCT TTCCGTCGTC GCTGCTGGCG GCCCTGCCCG CCATCGAAGC GGAGCTGGCA
GGCCTGGCGC GCATCCACGC GGTGCATCCC GGCGCCGATG GCTCCGAGCG GCTGCTGGTC
GCGCTGGCGG ACGGGCAGAC GGTGGAGAGC GTGCTGCTGC CGCGCGACGG GCTTTGCGTC
TCGTCGCAGG TGGGCTGCGC GGTCGGATGC CGGTTCTGCA TGACGGGCCG CGACGGGTTG
CTGCGCCAGG TGGGCAGCGC CGAGATCATT GCGCAGGTCG CGCTCGCGCG CATGCGCCGG
CCGGTGCGCA AGGTGGTGTT CATGGGCATG GGCGAGCCCG CTCACAACCT GGACAACGTG
ATGGAGGCGA TCGAGCTGCT CGGCACGGTG GGCAACATCG GCCACAAGAA CCTGGTGTTC
TCGACCGTGG GCGATCCGCG CGCGTTCGAG AGGCTGCAGC AGGCGCGTGT CAGGCCCGCG
CTGGCGCTCT CCTTGCACAC CACCAAGGCC GGCCTGCGCA AGAAGCTGCT GCCGCGCGCG
CCGAACATGA CGCCCGAGGA ACTGGTCGGC GCAGGCGAGC GCTACGCCCG GGCCACCGGC
TATCCGATCC AGTACCAGTG GACGCTGCTG GACGGCGTCA ACGACGGGCC CGAGGAGATC
GACGGCATCG TGAGGCTGCT CTCCGGCAAG TTCGGCGTGC TGAACATGAT CCCCTTCAAC
GCCGTGGAGG GCGTGGCCTT CAGCCGTCCG TCGCTGGAGC GCTGCGAACA GATGGCGCGC
ACGCTGCACC AGCGCGGCAT CCTGACCAAG CTGCGCCATT CGGCCGGCCA GGATGTCGAC
GGCGGCTGCG GCCAGCTGCG GGCGCGCGCG GCCGAGGCAA GGGTGGTGCC GATTCGGTTC
GCTCAGCCGA GCGAGGCCAC CCAATCCCAG ACCTGA
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| Protein sequence | MRIHELKQRL REAGAGPSHE QRILRLWSHA LPRNSGRRLP ESFFPSSLLA ALPAIEAELA
GLARIHAVHP GADGSERLLV ALADGQTVES VLLPRDGLCV SSQVGCAVGC RFCMTGRDGL
LRQVGSAEII AQVALARMRR PVRKVVFMGM GEPAHNLDNV MEAIELLGTV GNIGHKNLVF
STVGDPRAFE RLQQARVRPA LALSLHTTKA GLRKKLLPRA PNMTPEELVG AGERYARATG
YPIQYQWTLL DGVNDGPEEI DGIVRLLSGK FGVLNMIPFN AVEGVAFSRP SLERCEQMAR
TLHQRGILTK LRHSAGQDVD GGCGQLRARA AEARVVPIRF AQPSEATQSQ T
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