| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6017 |
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| Symbol | |
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| ID | 7975302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 741353 |
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| End bp | 742816 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796578 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_002947852 |
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| Protein GI | 239820667 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.817208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTCCT CCTCCACCGA CTACGAATCG CTGTTCGAGT TTGCGCCGAT GTCGCTCTGG
CTCGAGGACT ACAGCGGGCT GCGCCGGCTG TTCGACGGGT GGCGCAGCGC CGGCGTGGTG
GATCTGGTGG CGCACCTGAA TGCCGAGCCG CAGCGCGTGC GCGATTGCAT GGCGCAGCTG
AAGGTGCTGA GCGTCAACCA GAGCACGCTC ACCCTCTTCG GTGCGCAAAG CCAGGCCGAG
CTGCTCTCGA AGCTGGGCAG CATCTTCCGG GACGACATGA CCGCGCCGGT GATCTACGAG
CTCGACCAGC TCTGGCGCGG AAATCTCTGC TTCGACAACC AGACGGTCAA CTACGCGCTC
GACGGCCGCC GGCTCGACGT GCACGTGCGC GTGCAGGTGC TGCCCGGACA CGAGGCCACA
TGGGATCGCG TGCTGGTGTC GCTGGACGAC ATCACCGAGC GCGTGCAGGC CGAGCGGCTG
CGCCTGGAGA GCGAGCGCTA TGCGCGCGAG CTGTTCGAAC GTTCGCCGGT GTCGCTCTGG
GTGGAAGACT TCAGCGCCGT GAAGATCCTG CTCGACGATG TCCGCAAGCG CGGCATCAGC
GACTTCACCA CCTTCATCAA GGTGCACCCG GAGTTCATCA CGCGCTGCAT GCGCGAGATC
CGCGTGATCG ACGTCAACCG CGAGACCCTG CGCATGTTCG GCGCGGTCGA CAAGAACGAA
CTGCTGGAGA ACATCTCGGA CATCTTTCGC GACGAGATGC ACGACTCCTT TGCCGAGCAG
CTGCTGGACC TGTGGAACGG CAAGATGCTG CAGCAGCGGG AAGTGATCAA TTACGCGCTG
ACGGGCGACA TGGTGAACAT CCACATGCAG TTCGCGGTGC TCGAAGACCG GCTCGCCACC
TGGGACCTGG TGCTGGTGTC GCTGATCGAC ATCACGGCCC GCAAGAAGGC CGAGGCCTAC
CTCGAATACC TGGGCAAGCA CGACGTGCTG ACGCAGCTGC GCAACCGCGC CTTCTTCTCG
GAAGAACTGA ACCGGCTGTC GCGCAAGGGC CCGTGGCCGG TGTCGGTGCT CGTGATCGAC
ATGAACGGCC TGAAGCCCGT CAACGACGAG GAAGGCCACG CCGCCGGCGA CGCGCTGCTG
CGGCGCGTGG GCGAGGTGCT GAGCAAGGCG GTCGACGAGC CCGGCTGGCC CGCACGCATC
GGCGGCGACG AGTTTGCCGT GGTGCTGCCC AAGACCGACG AGCGCGGGGC GGAGGCGATC
CGCGACCGCA TCGCCTCGAT GCTCGAGCTG AACAACCAGT TCTACGCGGG GCAGAGCGGG
CGGGTGCTGA ACCTCGCGAT CGGCCTGGCG ACCTGCGAGG CCGGCGACCA GCTCGATGCG
GCGCTGCAGC GTGCGGACCG CGCGATGTAC GAGGACAAGG CCCGCCACTA CCGCGAAACC
GGGGCCGAGC GCCGCCGCGA GTAG
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| Protein sequence | MPSSSTDYES LFEFAPMSLW LEDYSGLRRL FDGWRSAGVV DLVAHLNAEP QRVRDCMAQL
KVLSVNQSTL TLFGAQSQAE LLSKLGSIFR DDMTAPVIYE LDQLWRGNLC FDNQTVNYAL
DGRRLDVHVR VQVLPGHEAT WDRVLVSLDD ITERVQAERL RLESERYARE LFERSPVSLW
VEDFSAVKIL LDDVRKRGIS DFTTFIKVHP EFITRCMREI RVIDVNRETL RMFGAVDKNE
LLENISDIFR DEMHDSFAEQ LLDLWNGKML QQREVINYAL TGDMVNIHMQ FAVLEDRLAT
WDLVLVSLID ITARKKAEAY LEYLGKHDVL TQLRNRAFFS EELNRLSRKG PWPVSVLVID
MNGLKPVNDE EGHAAGDALL RRVGEVLSKA VDEPGWPARI GGDEFAVVLP KTDERGAEAI
RDRIASMLEL NNQFYAGQSG RVLNLAIGLA TCEAGDQLDA ALQRADRAMY EDKARHYRET
GAERRRE
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