| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5967 |
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| Symbol | |
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| ID | 7975006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 694226 |
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| End bp | 695077 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796530 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_002947804 |
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| Protein GI | 239820619 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.599678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAACTCG CCAGCTTCAC ACACGCCGGA CAGGCCACCT ACGGAGTGGT TGAGGAAGAT
CGCTACCAAC TGCCGCCGGC CGACTTCCTC GGCCGCCATC CCGACTTGGT GTCGGTGCTG
CGCGCCGATG CCTTGCGCGA ACTCGCGCAG GCGGCCGCGG CAAGCGGCAG CGCCGTGCAG
GCCAGCGCCG TGCGCGCGCT TCCGGTGATT CCCAACCCAC CCAAGCTGAT CTGCGTGGGC
CTGAACTACA AGACCCACGT GGCCGAGACC AAGCGCCCGG ACAGCGAATA CCCGTCGCTC
TTCATCCGCT TCAACGACAC GCTGGCAGCG CATGAGGACA CGGTGCTGCG TCCGGCCTTT
TCTGAGCGCT TCGACTGGGA AGGCGAACTG GCCTTCGTGA TCGGCAAGGG TGGCCGCCAC
ATCCCGAAGG CGCAGGCCTT CGAGCACATC GCGGGCTATG CCTGCCTGAA CGACATCAGC
GTGCGCGACT GGCAGCGCCA CACGCATCAA TTCACGCCGG GCAAAAACTT TCCGGGCACC
GCCCCGTTCG GCCCGTACCT GGTGACCCGC GACGAGGTGC CGGACGTCAC CAGGCTGACG
CTGGAGACGC GCGTCAACGG CAACGTGATG CAGCAGGCAA GCATCGACGA CCTGATCTTC
GACATCCCTG TCCTGGTCGA GTACATCTCC CGCTTCACAC CGCTGTCGCC CGGTGACGTG
ATTGCCACCG GAACGCCCGG TGGCGTCGGC GACCGCCGCG AGCCGCCGCT CTACATGAAG
GAAGGCGACG TGGTCGAGGT GGAGATCACC GGCCTGGGCA TCCTGCGCAA CCGCATCGGA
ACGGCAGCCT GA
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| Protein sequence | MKLASFTHAG QATYGVVEED RYQLPPADFL GRHPDLVSVL RADALRELAQ AAAASGSAVQ
ASAVRALPVI PNPPKLICVG LNYKTHVAET KRPDSEYPSL FIRFNDTLAA HEDTVLRPAF
SERFDWEGEL AFVIGKGGRH IPKAQAFEHI AGYACLNDIS VRDWQRHTHQ FTPGKNFPGT
APFGPYLVTR DEVPDVTRLT LETRVNGNVM QQASIDDLIF DIPVLVEYIS RFTPLSPGDV
IATGTPGGVG DRREPPLYMK EGDVVEVEIT GLGILRNRIG TAA
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