| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5958 |
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| Symbol | |
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| ID | 7974997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 675966 |
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| End bp | 677675 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796522 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_002947796 |
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| Protein GI | 239820611 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCTC TTTTCCAGCT TCTCGAGCGA CCGCTTCTTT TTGTCGCGGG CTTCTCGTTC
TTCGTGAACC TGCTGCTGCT CGCCCCCGCG CTCTTCATGC TGCAGGTCTT CGACCGCGTG
CTGACGAGCC AGAGCCGGGA GACGCTGCTG ATGCTGTTGC TTGGCGTTGG CGTGGCGCTC
GGCCTGATGC TGGTGCTGGA CTACCTGCGC AGCCGGCTGC AGGGCGTCGC GGGGAACCTG
ATCGCCGATC AGCTGTCCCC GGTGGTGGCC AAGGCCGTGC TGGTGCGCAC GGCGCGCCGC
GCCGAGCGCG CGCCCTGCGA AGGCTTGCGC GACGTCGCGG CGCTGCGCAA CCTGTTTTCC
TCCCAGGGGC TGCTGGCCCT GTTCGATGTG CCATGGGCAT TCGTCTATGT CGCGGTCATC
TGGCTGGCGC ATCCGATGCT CGGCATGGCT GCGGCGGCCG CGTCGGTGCT GATGCTTGTG
CTTGCCGTGG TGAACGACCG CATCACGCGC CGCGATATCG AAGCCCTGCA GAAGGAAGCC
GCCAGGGCCA CGCGCTACCT CGAATCCTCG ATGCAGAACG CAGAACTGGC GCAGTCGCTC
GGAATGGGGG AGGCGGTGAT CGGGCGCTGG CGGAACCTCA ACGCCGGCGT CGCCGCGTTG
CAGGGCCCGA CCGCGCGCAA GTCGGTGGCG ATGGCCGCGC TCACGCGCAC CACGCGCCAG
ACGGTGCAGG TCCTGTTGCA GGCACTGGGC GCCTACCTCG TCATCACGGG CGAAGGCACG
CCGGGCATCC TGGTGGCCTG CACCATCCTG CTCGGCCGGG CGCTGGGGCC GGTCGAGCAG
GTGGTGGGAA GTTGGCGCGT GCTGGCCGAG GGGCGCCTGG CCTTCGCGCG CCTGTCCGAG
GTCCTGGGCG CCGCCGAGCG CCAGCCGCCA CGCATGGCGC TGCCGGCGCC GAGCGGCCGC
CTGCACGTGG AGGGCCTCGT GTTCCGGTCG TCGCAGGGCG AGCGGATGAT TCTCGCCGGC
GTCTCGCTGA GCCTGGAGCC CGGCGAGTCG CTGGCCATCA CCGGCCCCAG CGGTGCCGGC
AAGTCGACCC TGGTGCGCCT GTTGACTGGT CTGTGGGGGC CCCATGCCGG TGTCGTGCGT
CTGGACGATG TCGACCTTGC ACAATGGCCG CGCGAAGAAC TCGGCCCCTG GCTCGGCTAT
GTGCCGCAGG ATGTCGAGTT GTTCGCCGGC ACTGTTGCCG ACAACATCGC TCGGCTGGGC
GAGGTCGACC CGGACAAGGT GGTGCAAGCG GCGCAGCGCG CCGGCGTGCA TGCGCTGATC
CTGACGCTGC CCGAGGGCTA CGACACCGTC GTCGACCACA TGGGCGTGAT GCTGTCGCCG
GGCCAGCGCC AGCGCATCGC GCTGGCCCGC GCGCTCTACG GCAACCCCAA GCTGCTGGTG
CTGGACGAGC CCAACTCCAA CCTGGATGGG GCGGGCGAAC TGGCGCTGGG CGAGGCCTTG
AAGGCGCTGC GCGGGCAGAT CACGGTGATT GTCGTCACGC ACCGCAGCGC ACTGGTGCAG
CACATGGACA AGCTGCTGGT GCTGGAGGCC GGACGCGTCA AGCAGTACGG ACCGGTGGCG
GAGGTCATGC AGTCGATCAA GCGGAACGGC CAGAACACGG GCGGGGCGCA GGTGGTAATG
ATGCCGCGCC CTGCGGAGAA GGTGTCATGA
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| Protein sequence | MKPLFQLLER PLLFVAGFSF FVNLLLLAPA LFMLQVFDRV LTSQSRETLL MLLLGVGVAL
GLMLVLDYLR SRLQGVAGNL IADQLSPVVA KAVLVRTARR AERAPCEGLR DVAALRNLFS
SQGLLALFDV PWAFVYVAVI WLAHPMLGMA AAAASVLMLV LAVVNDRITR RDIEALQKEA
ARATRYLESS MQNAELAQSL GMGEAVIGRW RNLNAGVAAL QGPTARKSVA MAALTRTTRQ
TVQVLLQALG AYLVITGEGT PGILVACTIL LGRALGPVEQ VVGSWRVLAE GRLAFARLSE
VLGAAERQPP RMALPAPSGR LHVEGLVFRS SQGERMILAG VSLSLEPGES LAITGPSGAG
KSTLVRLLTG LWGPHAGVVR LDDVDLAQWP REELGPWLGY VPQDVELFAG TVADNIARLG
EVDPDKVVQA AQRAGVHALI LTLPEGYDTV VDHMGVMLSP GQRQRIALAR ALYGNPKLLV
LDEPNSNLDG AGELALGEAL KALRGQITVI VVTHRSALVQ HMDKLLVLEA GRVKQYGPVA
EVMQSIKRNG QNTGGAQVVM MPRPAEKVS
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