| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5957 |
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| Symbol | |
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| ID | 7974996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 674632 |
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| End bp | 675969 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796521 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_002947795 |
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| Protein GI | 239820610 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTACA CCGCGCATGC CATCGCGGCC AACGACCCCC TGGCGCTCCA TGTGCGCGAA
GCGCGCCGCC TGACGCACTG GGGCCTGGCC ATGCTGGTCT GCGGACTGTT GCCGGCCGCT
GCATGGCTGG GCTTTGCGCC GCTGTCTTCG GCCGTCGTGG CGCAGGCCTA TGTCAAGGTG
GACCTGAACC GGCGGCCGGT ACAGCATGCC GAAGGCGGCA TCGTGCGCGA GGTCCTGGTG
CGCGACGGCC AGCATGTGCG GAAGGGAGAG CCCTTGCTGG TGCTGGGTGA TGTCTCGGTC
GATGCCGACC GCAACAGGCT GGACCACCGC GTCAAGACCG AGCGCGCCAG CCTCGCGCGG
CTGGACGCGG AGCAGACCAT GGCGCGCGCG ATCGCTTTCC CTCCCGACGT GGTCGAGACC
GCGGTCGCGG ATCCGCGCCT GGCGGCGCAG TTGGACAAGG AGCGCGCATT GTTCGAGGCG
CGGCGCGACG CGCTGGTGGG GCAGGTGCGC CTGCTGCGCT CGCAGCGCGA GAAGGTGGCC
GAGGAAATCG TCGCGCTGCG CGCCCAGATC GCGCAGGCGA GCGAGTCGAT GAAGTTTCAG
AAGAGCGATC TGGAGACCAA CCGCAAGCTG CTCAAGGACG GCTTCGTCTC GGCCGCGCGC
ATCGCGCAGT TCGAAGGCAC CGTGGCCGAC TACGGCGTGA AGATCGAGGA GCGGCGCGCG
GAGCTGGCAC GTGCCGAGCA GCGCACGGTC GATGCCGACC TGCGCATCCG CTCGCTGGAG
AGCGACTACC GCCAGCAGGC GAGCGACCAG CTCAAGGTCA CGGCAGCCCG GCTGGCCGAG
ATCGAGCAGG AGCGGCGCAA GTCGACCGAC GCCTCGGCGC GTCAGGTGAT CACGGCGCCA
GCCAGCGGCG AGATCATCGA TCTGAAGTAT TCGACGCCTG GCGCAGTGAT CCCGCCGCGC
GAGACCATCG CCGATGTCGT GCCGGACGAC AGCCGACTGA TGACCGACGC GCGCGTGCGT
CCCGAGGACA TCGGCCGCGT TCAGCGCGGG CAGGCGGCCG ACATCCGCTT CACGGCATTC
AAATACCGTA CCACGCAACT GGTGCACGGC AAGGTGGTTT ACGTATCGGG TGACCGCCTG
ATCGACCGTG CGACCAATGC GCCCTACTAC TCGGTGCTGG TCGAGGCCGA TCCGGCTTCG
CTCGCGACTG CGGGAGACCT GAAGCTGCTC GCCGGCATGC CCGCCGAGAT CTATCTGCAG
GGGGAGGAGC GCACAGCCCT CCAGTACCTG GTGGAGCCGA TCACCCAGGT GTTGCGCCAT
GCTGCCCGCG AGCGCTGA
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| Protein sequence | MNYTAHAIAA NDPLALHVRE ARRLTHWGLA MLVCGLLPAA AWLGFAPLSS AVVAQAYVKV
DLNRRPVQHA EGGIVREVLV RDGQHVRKGE PLLVLGDVSV DADRNRLDHR VKTERASLAR
LDAEQTMARA IAFPPDVVET AVADPRLAAQ LDKERALFEA RRDALVGQVR LLRSQREKVA
EEIVALRAQI AQASESMKFQ KSDLETNRKL LKDGFVSAAR IAQFEGTVAD YGVKIEERRA
ELARAEQRTV DADLRIRSLE SDYRQQASDQ LKVTAARLAE IEQERRKSTD ASARQVITAP
ASGEIIDLKY STPGAVIPPR ETIADVVPDD SRLMTDARVR PEDIGRVQRG QAADIRFTAF
KYRTTQLVHG KVVYVSGDRL IDRATNAPYY SVLVEADPAS LATAGDLKLL AGMPAEIYLQ
GEERTALQYL VEPITQVLRH AARER
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