| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5952 |
|---|
| Symbol | |
|---|
| ID | 7974991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 669964 |
|---|
| End bp | 671097 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644796516 |
|---|
| Product | peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase |
|---|
| Protein accession | YP_002947790 |
|---|
| Protein GI | 239820605 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTC CTGAATATTT TCCCCTTGTC GATGTTTCCG GTGCGCCATA TGCGCGCGGC
GTGCAGCACG GCCGTGCCGT GCCCGAGCGA GTGGCCGGAG GCGTGGCGCT CTACCGCGCC
CAACTGGGCC GGCGCGGCTT GGACGACGCC ACCATCGGCC AGCTCGCGCG ATCGATGCTG
CCGATCATCG AGGCCTACGA CACCACCTAC CTCGAGGAGA TGCGCGGCAT CGCCGAGGGC
GCAGGGGTCT CGCTCGAGGA CGTGGTGATG ATCAACTGCC GCACCGAGAT GCTGTTCGGC
TATGCCGACA TGAAGCAAGA CGCCGCGGCA TCGGCGGACG CGGCAGCGAG CGAAGACGGC
GACTGTACCG GCCTGGTCGT GCTGCCGGCG CGTTCGGCCA CCGGGCGGCT CATGCACGCC
CACAACTGGG ACTGGCGCCA GGAGTGCGTC GACACCGGCA TCGTGCTGCG CATCCGCGGC
GAGAGCGGCC CTGACATGCT CACCTTCACC GAAGCCGGCG CCCTGGCGCG CCATGGCTTC
AACAGCCACG GCGTCTCGCT CACCGGCAAT TCGCTGACCT GCGACGAAGA CTTCCGCCGG
GGCCCCGGCG TGCCGCTGGT GCTGCTGCGC CGCCGCGTGC TCGAAGCGGC CAACCTCGCG
CAGGCCATGA AGACCATCTG GGTGTCGAAG CGCTATTGCG CCAACAACAT GATCCTGGCG
CAGTCCACCG GCAACGACGG CTCGGGCATC AGCCTGGAGA CGTCGCCCGG CGAGATCTTC
TGGACCTTGC CGGAGAACGG CCTGCTGGTG CATGCCAACC ACTGGATGTC TCCTTCCGCC
TTGATGAAGC TGCGCGACCC CGGCCTGCCG CAGCGGCCCG ACAGCATCTA CCGCCAGCAT
CGCGTGGAAA ACGCGCTCGG CCGCATCGAG GGGCGCATCG ACTGGACACA CGTGAAGGGG
GCACTGGCCG ACGAATTCGG CAAACCCGAC GGCGTGCTGC GCACGCCCAA GCCGGCGGAT
TTCAGCAGCA TTTCGGCCAC CGTGGCCACC ACGCTCATGG ATGCGGCCGC TCGCGTGATG
TGGGTGGCGC GCAAGCCGTA CGAGGCGCGC AACTTCCGGG AGTACACGCT GTAG
|
|---|
| Protein sequence | MTTPEYFPLV DVSGAPYARG VQHGRAVPER VAGGVALYRA QLGRRGLDDA TIGQLARSML
PIIEAYDTTY LEEMRGIAEG AGVSLEDVVM INCRTEMLFG YADMKQDAAA SADAAASEDG
DCTGLVVLPA RSATGRLMHA HNWDWRQECV DTGIVLRIRG ESGPDMLTFT EAGALARHGF
NSHGVSLTGN SLTCDEDFRR GPGVPLVLLR RRVLEAANLA QAMKTIWVSK RYCANNMILA
QSTGNDGSGI SLETSPGEIF WTLPENGLLV HANHWMSPSA LMKLRDPGLP QRPDSIYRQH
RVENALGRIE GRIDWTHVKG ALADEFGKPD GVLRTPKPAD FSSISATVAT TLMDAAARVM
WVARKPYEAR NFREYTL
|
|---|
| |