| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5950 |
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| Symbol | |
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| ID | 7974989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 668063 |
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| End bp | 669007 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796514 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947788 |
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| Protein GI | 239820603 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCCGCT TCGCCGCGGC CCGCATCGCG ATGGCGATTC CCACGCTGCT CATCGTGGCG
GTGTCGGTGT TCGTCCTGAT ACGGCTCATT CCAGGCGACC CCGCGCAGCT GCTGCTCGGC
GACCTGGCCA CGCCCGCCAG CCTCGCCGAC CTGCGCGCCC GCCTGGGGCT CGACCGCCCG
CTGGCGGCGC AGTTCGGCAT CTGGTTCGGC CACGTGCTGA AAGGCGACCT GGGCCTCTCG
ATCAACAGCG GCCAGGACGT GCTCTCGCTC GTGGCCGACC GCTTCCTGGT CAGCGGCCGC
ATCGTGCTGG TGGCCGTGGC GCTGGCCGCG ATGGTGGCGG TGCCCGCCGG CATGATCGCC
GCGTGGAAGC ACAACCGCGC GCCCGACCTG CTGCTGGTGG GCTCGGCCAC GCTGCTGGTG
TCGATTCCGA CGTTCTGGCT CGGCCTGCTG TTGCTGCTGC TGTTCGGCCT CCAGCTCGGC
TGGCTGCCGG TGGTGGGCTA CGTGGGCATT GCCGAAGACT GGAAGAACGG ACTGCTCTAC
CTCGCGCTGC CGGTGCTCAC GCTTTTCCTG CACGAGATCG GCGTGCTCAT GCGCATGGCC
CGCGCCAGTA CGCTGGAGGT GCTGCGGCTC GACTACATCA CGCATGCGCG CGCCAAGGGC
CTGTCGGAGC GCGCGGTGCT GGTGCGCCAT GCCTTCAAGA ACGCGTTCGG CCCGACCTGG
ACGTTGATCG GCCTGGTGCT GGGCAACCTG CTCGGCGGCA TCGCGGTCGT CGAGACGGTG
TTCACCATTC CCGGGCTCGG CCGGCTGCTG GTCGACGCGA TCTTCGCGCG CGACTACCCG
GTGATCCAGG GGTGCCTGCT GTTCGTGGCG GTGATCTACG TGGTGGTGAA CCTCGTCATC
GATCTTTGCT ATCCCTTGTT CGACCCTCGC GTCACTGTCG AATGA
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| Protein sequence | MFRFAAARIA MAIPTLLIVA VSVFVLIRLI PGDPAQLLLG DLATPASLAD LRARLGLDRP
LAAQFGIWFG HVLKGDLGLS INSGQDVLSL VADRFLVSGR IVLVAVALAA MVAVPAGMIA
AWKHNRAPDL LLVGSATLLV SIPTFWLGLL LLLLFGLQLG WLPVVGYVGI AEDWKNGLLY
LALPVLTLFL HEIGVLMRMA RASTLEVLRL DYITHARAKG LSERAVLVRH AFKNAFGPTW
TLIGLVLGNL LGGIAVVETV FTIPGLGRLL VDAIFARDYP VIQGCLLFVA VIYVVVNLVI
DLCYPLFDPR VTVE
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