| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5947 |
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| Symbol | |
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| ID | 7974986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 663947 |
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| End bp | 665512 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796511 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002947785 |
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| Protein GI | 239820600 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.281116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCATT CCTTCTTCCG TCTGGCAGCC ATGGCCGGTG CCGGCCTCGC CTGCGCCGCG
GCACTCGCGC AAACCACCGT GACGGTCGCG CAGCCGGCGG ACATCCGTTC CACCAATCCC
GGCGTCAATC GCGACAACAC CACCGACGGC ATCGTGCTCA ACATGGTCGA AGGGCTCGTG
GGCTACCGGC AGGACGGCAG CGTGGGACCG CTGCTCGCGC AATCGGTCGA CGTCTCCAAG
GATGGGCTGA CCTACACTTT CAAGCTGCGC AAGGGCGTCA AGTTCCACAA CGACGCGCCG
CTCACCTCGG CCGAAGTCGC CTGGAGCTGG AAGCGCTACA TGGACCCGAA GACCGACTGG
CGCTGCCTCA GCGAGTACGA CGGGCGCAAC GGCCTCAAGG TGGTGGACGC CGCAACGCCC
GACGACGCCA CCTTCGTGCT GAAGATCAAC CGTCCCTCGG CCGTGTTCCT CGATACGCTG
GCGCGCTCCG ACTGCGGCAT GACGGCCATC CTGCATCCGA GCTCGGTCAA GCCCGACGGC
AGCTGGGACA AGCCCGTGGG AACCGGCCCG TTCAAGTTCG GCGAATGGAA GCGCGGCGAG
TACGTCACGG TGACCGCGTT CAAGGGCTAC ACCTCGTCGC CGGGCGCCAC CAAGGCCGAT
GGCTACGTGG GCCTGAAGGC GCCGCTCGTG GACACGGTGC GCTTCCTGGT TGTGCCCGAC
GCGGCCACCG CCGCGGCCGG CCTCAAGTCC GGAGCCATCG ACGCCGGCCA GATCACATCG
AGCGATGCGC AGGAGCTCAA GGCCGATCGC AACCTCGTCG TGCAGGCACC CACCGAGGCG
GTGAAGAACA CGCTGCTCTT CCAGACGCGC GATCCGCTGC TGAAGAACGT GAAGCTGCGT
CAGGCGATCG CGGCCTCGCT CGACATGGAG CAGATCGTCG CGGCCGCATC CGAAGGCCTG
GGTTCGGTCA ACAACTCGGC GATTCACAAG GGCTCGGCCT TTTACGGCGC GGCCGAAAAG
AAGGGCTTCC ATTACGACCC CGCCCTGGCC GCGAAGCTGC TGCGCGAGGC CGGCTACAAG
AACGAGAAGA TCACCATCCA GACCAACAAG CGCGCCCATG TGCCGAGCTA CACCGTGGCG
GTGCTGGCGC AGGCGATGAT GCAATCGGTG GGGATCAACG CGCAGATCGA AGTGCTGGAA
TGGGCCACGC AGCTCGACCG GTACAACAGC GGGAACTACC AGATGAGCTC GTTCAGCTAT
TCGTCACGGC TCGATCCCGC GCTGAGCTAC GAGCAGTTCT CCGGGCCGAA GGACAAGCAG
GCGCGCAAGG TGTGGGAAGA CCCGCAGGCG CTGAAGCTGC TCGACGAGAG CTTCACCGAG
ACCGACCGGG CAAAGCGCCA GGCGCTGTTC GACCAGCTCC ACGCATTGAT GATCCAGCAG
GTCCCGATGA TCATGCTGTT CAACGGCATC GACGCCTGGG GCGTGCGCAA GCGCCTCGCC
GGGTTTTCGG TATGGGAAGG CAAGCCGCGG CTGTGGGGGG TGTCGGCCGC GGCCAAGGCG
GGCTGA
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| Protein sequence | MPHSFFRLAA MAGAGLACAA ALAQTTVTVA QPADIRSTNP GVNRDNTTDG IVLNMVEGLV
GYRQDGSVGP LLAQSVDVSK DGLTYTFKLR KGVKFHNDAP LTSAEVAWSW KRYMDPKTDW
RCLSEYDGRN GLKVVDAATP DDATFVLKIN RPSAVFLDTL ARSDCGMTAI LHPSSVKPDG
SWDKPVGTGP FKFGEWKRGE YVTVTAFKGY TSSPGATKAD GYVGLKAPLV DTVRFLVVPD
AATAAAGLKS GAIDAGQITS SDAQELKADR NLVVQAPTEA VKNTLLFQTR DPLLKNVKLR
QAIAASLDME QIVAAASEGL GSVNNSAIHK GSAFYGAAEK KGFHYDPALA AKLLREAGYK
NEKITIQTNK RAHVPSYTVA VLAQAMMQSV GINAQIEVLE WATQLDRYNS GNYQMSSFSY
SSRLDPALSY EQFSGPKDKQ ARKVWEDPQA LKLLDESFTE TDRAKRQALF DQLHALMIQQ
VPMIMLFNGI DAWGVRKRLA GFSVWEGKPR LWGVSAAAKA G
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