Gene Vapar_5942 details

Gene Information

• Locus tag: Vapar_5942
• ID: 7974981
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 643158
• End bp: 650396
• Gene Length: 7239 bp
• Protein Length: 2412 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644796506
• Product: conserved repeat domain protein
• Protein accession: YP_002947780
• Protein GI: 239820595
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACGAC TCAAGAACAC GCTGCGCTCG ATGGCGGGCA CGGCATGGTG GTGGCTCCTG 
TGCGGGGCGT GGCTCGTGGC CGTGCCGCTT TCCGGGCATG CACAGCAGGT GCTCAGGCCG 
CAGACCGGTA CGTTGATCAA CGGCACGATC GTGGGCTCCA GCAACGGCTT GTCCATGAGA 
ACTTACTGCG TCAGCGGGTT CCCGACCGGC CTGACGATGT GGGAGCGGCT GAACAGCGCC 
GCGGTCAGTG GCACCTTTGC CAATCTGACC GGCGGTTTGC GGGCCTATGA GCTGCGCTGC 
TCGCCGTTCA CCGTCACCGA GGGCGCGACC GCCGCGACCA TCACCTGGGG TGCGGCAACC 
CAGCGTGGCG TCGCTGGCCG ACCCATCAAC GGCATGACGC TGCGCGGTCC CCAGGCGTGT 
CCGGCCGGCA CGGTGATTGC AGTGATGGGT GGCGTCGACC GCATGTTCAA TGGCGCATCG 
GGCAACATCT ATCCGACGCA GCTCACCTTC ACCTGCCGAC CGGTCACGGT GGTGGCAGGC 
GACTGGTTCC GCGTGGCGGC GACCGGCGGC GCAAGCTACA CGCTGGGCAT CACGACGAAC 
GACGGCGGCA CCGGTCCCGG CTCTGCAGTG CCGGGACCTC TGCGCGCGCC GCGCACCGTT 
TGCCCCTATT CGGCCACCAA CACCTGCAAT GGCCTGGAAG ACCTCGGCGG CGGGGAGCTG 
ATCGACGGCT TCTCCGGCGT GCGAAGCGAG TTTCCCGATG CGCGCGTTTC GCAGCGCATC 
AGCTTCGTCA ACTACGCCTG GAGCCAGGCG CTCGGCCCCA GCACGAACAC CGCCACCTGG 
CGCCCGACCG CGGGCCGTCT GCCCTTCTAC CCGCCGACCG TCGCCAACAA CACCGCCCGC 
TACCAGGACA CCTACGAGAC CTACGCATCG GCAGGCACCA GCTACAGCGG CGGTGCCCTG 
GCACCAAGCA ACGTCAGCGT CCAAAACGTC GTCAGGACCG GTACCTGCAA CACCTCGCAC 
ACGCTCGCAA CGCAGGAGGA CTACACCTGC ACGAACATCA TCACCGGCCG GCCCGACCTG 
CAGGTGCGGG TCGCCGTGCC GCCGGATGCC TGGACCAGCC ACGGGCAGGA ACGCATCGTC 
AGGCTCACGG CCAAGAACTT CGGCCCGGGG AGCACCACGG CCGCCGACAA CTCGACCGCC 
GTGCTGGCTC TTCCCGCCGG ATGGAACACC GGCACCTTGC CCGCCAACTG CGCAAAGGCC 
GGTTCGCCGG TGGTGGTGAC GTGCCAGCTC AATCCCACGC TGCTCGCGGG CTCGAGCGGG 
CCCGGCATGA CGGACGGCGG CGAAGCCAAC TTCGACATCC CGGTGTTCCC GCAGCCCACC 
GTGGCGGCCG GCAGCTACCC GGTCGTCAAT GGCGCCAGGG TTTGCGTCCA GGCGGCATCG 
TCCGGCAACC CCCACTACTG CACGGTGCCC AACGATACGA ACCCGAACAA CGACGACGGC 
ATCGCGGTGG ATGAAACCGA CACCATCGTC CTCGCCTACC TCACGCCGCC GCTGATGCCG 
CCCCGCGTCA CGACCACCGT GGTCTCCAAC GGCGGGGTGG GTTCCTTCGC GTTCACCGGC 
ACCAACGACG CGGCGCCTGT CAGCCCCATC GTCACGACGG TGGCCGGCGA GGGGGAATCG 
GGGCCGACCA TGGAATTGGG GGTCGCGCGG AGCGACACGA TCCTGCAGCA GTCCGCCCCG 
CCCGCGGGCT TCGCGCTGCG CAGCATCTCG TGTACCGGCA TGGCCGCGGG CGGCACCGCG 
ACCTATGACC TGGCGCTGAG GCGGGTGACC CTGAATGCGG CGGCCACGGA CTACGGCGCC 
AACATCGCCT GTACCTTCAC CAACACCCGC GTGGTCGTCA CCGTCAGCAA GCTGGGCGAA 
GGCGGAACGG ACAGCTTTTC GTTCACCGGC TCCAACGGCT TCGCGGCGCA AAGCATCACG 
ACTTCTGCGG CCAACGTGCC AGAGGAGGGC GATCCATCCG GCCTGACCAC CGTGGGCGCC 
GCAACCACCA TCACCGAAGG CGTGCCGCCC GCCGGCTGGA AGCTCAAGGG CATCGCCTGC 
ACGGGCATGG GCGCGGGCGG CACGGCCACG GTGAACCTCA CCTCGCGCTC TGTCACCCTG 
AATGCAGCCG CCACGGCAGC CGGCAGCAAC ATTGCGTGTA CCTTCACCAA CACCAAGCTG 
CCGACGATGA CGGTCAGCAA GGTGTCGATC GGCGGCACGG ACAGCTTCGC CTTCACCGGT 
ACCAACGGCT TCACCGCCAC CAACGTGACG ACGGAAGACG ACGGCGTTGC CATCGCGGCG 
GCGGAACAGG TGCTCACGGC CGCGAACACC GCCACCAGCA TCACCGAAAG CGTGCCGCCG 
GTCCCCTATG CGTTGACCGG CATCAGCTGC ACGGGCATGG GCCCGGGAGG CAGTGCCACG 
CCGAACCTGG CCACGCGCAC CATCGCGCTG AACGCCGCGG CCACTGCACC GGGCAGCGAG 
ATCAACTGCA CTTTCACGAA CACGGTGCAG CCGCAGCTCA AGCTGGTGAA GACCGCCGGC 
GCCGCGAGCT TCGCAGTGGG CGTGCCGTCG AGCTACACGC TCACGCTGAA CAACATCGGC 
CCGGTACCAA CCTCCGCTCC CGCGACGATC AGCGACACCG TGCCCGCCAC GCTGACGCTC 
GGCACCATGC CCGCCGGCTG CAGTGCAAGC GGGCAGGTCG TGAGCTGTAC CGTGCCCGCG 
GGGCTCGCCG CCACCAGCGG CGCTGCGGCC TTCGTCATTC CGGTCACGCC CTTGCCGGGC 
GCCTCGCCGA GCGTGGCCAA TACCGCGACG GCCACGGGCG GTGGCGACCC GTCCTGCACC 
GCGACGGGCA ATTGCATCAG CAGCGTGACC ACGCCGGTGC TGGGGGAGCC CCGCATCACC 
CTGCGCAAGA CCAAGACCAA CATCGCCGGC ACCCACACCT TCGGCTTCAC GCTGACCGGC 
GTGACCAACC CGACGGACAG CATCGCCGTG ACCGCGCTGG CCACGCCGCA GGCCTCCACC 
ACGGTGCACG TGGGCACGCC GGGCGTCGAG GCCTCCGTGC AGGAGTCGGG CGTGCCCGCG 
GGCTGGCCGG CCAACCCGGT GTCGGTGTCC TGCCTGGACT CCGCAGCCGC GACGAGCGGC 
AACCCAGCGA CGCAGCTGGC CATACTCAAC GGCAACACCG CAACCCTGCC GGCGAGCGTG 
ATGCGGCCCG CGGCGGCCAT TGCCTGTACC TTCACCAACA CGGCCACCGC GCGCGTCGCG 
GTGAACAAGA CCGCGTCGGC GACCGCCGGA GCCGGCGGCA GCATCACCTA CGGCCTGAGC 
TTCGCCAACA CCGGCCCGGT GGCCACCGGC ACTTCGCTCG TGGTGAGCGA GCAATTGCCG 
CCTGGCGTGG TGGCCAATTC GGTGGTGCCC GGCACGGGTG TCACGTCGGT GAGCTGCGGC 
ACGCTGCCGA GCGCTCCCGG TGCGCTGCTC AACTGCACCA TGACGCTGCC CGCCGGCGGC 
ATTCCGGCCA CCACCGGCGT GCGCGGCTTC ACCCTGAACG CGACCGCGCC GATCGTCGAC 
ACGGGGACCG TGCTGACCAA CTACGCCAGC ACCAACGTGA GCGGCGCGGG CCTGCCGGTT 
ACGGCAGCCG GCGCCGGCTG CTTCTCCAGC GGCGCGGTGA GCTGCGCCAA CGCACAGACC 
ACCATCGTGG TCGGCCCCGC GGCCGGCGGG CAGTCGGGCG TGCGCATCGT CACCGACAAC 
CAGTTGGCCA ACGGCACCGC GCAGGACGTG CTCGAAGCGT TCATCCGCGA TGCCTCCGGC 
AACGCGGTCC AGGCCGGCAC GGTGGTGAGC TTCGGCGCCA CGCCGAATGT CGCCTTCAAC 
GGCGGCGCGG TCGGCGCGGC CGGCAGCTGC ACCACCACGG CGGCAGGCCT GTGCCAGGTG 
AGGGCAACCA GCACCGTGGC CGCGGTCTAC AGCACGACGC AGGTCACGGT CGGCGGCGCT 
GTGCTGAGCG GCAACTTCAG CGTCGGTGAA GACAGCTACC TGCCGAGTCC GCAGCCCTAC 
CGCTTCGGCA GCCGGCCGAC CGTGACCATC CGCAAGACCT CGCTCGGAGG GGTCGGCACG 
TTCAGCTTCA CCGGAAGCAA CGGCCTGGTG GCGCGGAACA TCACGACCAC CGTGGCCGGT 
ACGCCGGTTG CAACGGCGGT GCAGACGCTC ACCGCGGCGA ATATCGCCAC CACCATCACC 
GAAGGCGCGC CGCCCGCGGG CTACGCGCTG ATCGATGCCT CGTGCACCGG CCTGGGCGCC 
GGCGGATCGG CCTCGCGCAA CGGGCGTGTG CTCACCCTCG ATGCGGCAGC CACCGCGCCC 
GGTAGCAACA TCGTCTGTAC CTTCACAAAT TCCCTCGACA CGGGCACACC ACCGCCGCCC 
GTTGCGCCGA CGGTGATGTG CTCGACGAAC GCAGCGGTGT TCAATACCGG CTTCGACGGT 
CCCGTCGGGC CGCCGGTGGC CACCGGGCGT GACCCGGTGT GGGAATCGGG CATCGGCACG 
GCGACCGGCG GTCCGGCCAG TGTGGCGGCA TGGGCGCGCT CGTACGTCGG AAACAAGGCG 
CCCGCCAGTT GGATCGCGTC GCCGTTCGGC AATGCCAATT GGGTGTCGCA ATACCCGGGC 
TCGCATACCG GCAATGTCGA CATCTACCAT CGCTTCACTT TCAACATGGC GCCGTCGGTC 
AATCCGGCGA CCTTTGCGCT GAAGCTGGAC TTCTATTCCG ACAACTCGGT GGCGGCCATC 
TATGTCAACG GCGTGCTGCA GAGCGTTCCG GGCGTGCCGC AGGCCCCCAC CAATCCGTAC 
TTCTACGCCG GCTTTGTCGC GGGTGCCGCG GCCACCACCA ACCTGGTGAG CAACTGGCAG 
ACCGGTTCCA ACACGGTGAT CGTCCACATC AAGAGCGGCG CGGGAGCCCA GGGCTTCCTG 
GCCCAGGCCA CCACCAGCGC GTTGTGCGCG CCCGCGACGA TCAATCTGCA GAAAACCACG 
CTCAACGGCG CCGGTGGACC CTTCGGCTTC AACCTGACGA ACACCACGCA GGCCAGCGGC 
ACGGTCAGCA CTCTTGCTGT CGGCACGCCG GCGCAGGTGG ACGGCAACAC GGCCGCGGCG 
GGCGTGCAGG CCTTCAGCGC CAGCGTGAGC AACAAGGTCA TCAGCATCAC CGAACCCGCG 
GTACCGGGCT GGCACTTGAC AGGGGCGAGC TGTACCGACG CCGGGGTGCC GGTCGGCAGC 
CTGGGCACCG GCGCGAGCGG GCGCACCTAC ACCATTCCCG CGGCCAGCGT GCAGCTGGGC 
AAGTCGCTGC AGTGCGTGTT CACGAATTCC GCCTCGGCCA CGGTGACCAT CCGCAAGGTG 
TCCCTGGGCG CGACCGGAAC CTTCGGCTTC AGCGGAAACA ACGGACTGGC ACCGCAGAGC 
CTCACCACCA CCGCGCTCGG CACGCCGGTT GCAGGCGCCA TCCAGACCGT GGCGGTACCG 
AGCACGGCGA CGATCATTGC CGAAGACCCG CTGCCCACCG ACTACGCACT GACCGGCGTC 
AGTTGTACCG GCCTGGGCGC GGGCGGCACG GCAACGCCTG ACCTGCCGAA CCGCAAGGTG 
ACGCTGGATG CGGCCGCCAC GGCGCCGGGC AGCAACATTG CGTGCACCTT CACCAACACC 
TACACGCCGC CGTATCCACG GGTGCAGATC GTCAAGACCA CCATCGGCGG CACCGGCAGC 
AACCTGTTCC GCTTCGCGCT CAGCGGGCTT TCGACGGCAA GCGACAGCAT CACGGTGGTG 
GGTGACGACA CCGTGGAAGG CGCGGCCAAC ATCACGGGCA CCGCCAGCGC CGGTGTCACG 
ATCAGCGAAA CCTCGCCCGA GGGCTGGCCG GCCAGCCCGG TGAGCGCCAG CTGCGTGGAC 
TTGAACAGCG CGACTCCGGC CGCCACGTTC GGCACGCTCA CGGGCAATCA GCTGGCCATT 
CCCGGGGCCA ACATGGTCGC TGGCGCGGCC ATTACCTGCA CGTTCGTGAA CGGCTATCCC 
AAGAACGTGA CCGGCCGGGT GTTCCTCGAC AACGGCACGG GGGGCGGAAC CGCGAACGAC 
GGCCTCATCA ACGGCGGCGA GGTCGGGCAG AGCGGCATCA GCATGCGGCT GACCGACTGC 
GCGGCAACCA CCTTGTCGAC CGCCGTCACG GACGGCAGCG GCAAATACGC GTTGGCCGTG 
CCTTTCACCA TCGGTACGGG CGATGCGCTG TGCGTGGAAG AGACCAACAC GGTTTCGCGC 
ATGTCCACCG GTGCTTCGCT GGGTGCCGTC CAGCTGCCTT CCGGCCAGAC CGTGGCGAAC 
GCAGGCACCG GCTACACCTA CACCCGTGAC GGAACGCCGG ATCGCATTGC CTTCACTTGG 
AACAGCAGCG GCCACGCGGG CCTGAACTTC GGCGACGTCG AGCGCAACAC GCTGGCTGCC 
GACGGCGCCA AGAACGGCCT TCCGGGCAGC ACGGTGAGCT ATCCGCACAC CTTCACCGCG 
CGCACGGGCG GTGAAGTGAG CTTCGATATC CCGAATGCCG TGGACACGCC TGCGATCAGC 
GGCTGGAGCG GCAAGATCTT TGCCGACACC GGCTGCACCG GCGCGCTGCA GGCCGGCGCG 
GCGCTGCTCT ACCCGCCGGC CGTGCCGGTG ACGGTGGCCA CGGGACAGAA CGTGTGCATC 
GTGATGCAGG AGTTCATTCC CGCCAACGCG ATGAGCGGCA ATAACAACAC CAGCACCGTG 
CAGGCCAGCT TCGTCTACAC CAACGCCGGC CCGGGCCTGA ACGCCACCTA CACGGTGACC 
GACATCACCA CCGTGTCGAC CAGTGCGCTG GAACTCAAGA AGGAAGTACG AAACGTGACA 
CGCGGCGGCA GCTTCGGCAT CAACAACCAG GCCAAGCCCG GCGAGACGCT GGAGTACCGC 
ATCGCCTATA CCAACAACGG AACGACCCCG ATCAGCGGCT TGACAGTCAA CGACACGACA 
CCGCAATTCA CGGCCTTCAT TGCGGCGCAG GCGGACACGA CACCGGCCAC GCTCGCGAGC 
TGCCAGAAGA ACACGCCCGC CAACCCGGCC CCGGCTCCGG CCGTGGATTG CAGTGCCGCG 
CAAGCAGAGG GTGGAACGGG TGCGCTGAGC TGGAAGTTCG CGGGGCCGCT GGACCCTGGC 
GCGTCGGGCA CGGTCCTCTT TACTGTCAAG GTGAACTGA 

 

Protein sequence

MQRLKNTLRS MAGTAWWWLL CGAWLVAVPL SGHAQQVLRP QTGTLINGTI VGSSNGLSMR 
TYCVSGFPTG LTMWERLNSA AVSGTFANLT GGLRAYELRC SPFTVTEGAT AATITWGAAT 
QRGVAGRPIN GMTLRGPQAC PAGTVIAVMG GVDRMFNGAS GNIYPTQLTF TCRPVTVVAG 
DWFRVAATGG ASYTLGITTN DGGTGPGSAV PGPLRAPRTV CPYSATNTCN GLEDLGGGEL 
IDGFSGVRSE FPDARVSQRI SFVNYAWSQA LGPSTNTATW RPTAGRLPFY PPTVANNTAR 
YQDTYETYAS AGTSYSGGAL APSNVSVQNV VRTGTCNTSH TLATQEDYTC TNIITGRPDL 
QVRVAVPPDA WTSHGQERIV RLTAKNFGPG STTAADNSTA VLALPAGWNT GTLPANCAKA 
GSPVVVTCQL NPTLLAGSSG PGMTDGGEAN FDIPVFPQPT VAAGSYPVVN GARVCVQAAS 
SGNPHYCTVP NDTNPNNDDG IAVDETDTIV LAYLTPPLMP PRVTTTVVSN GGVGSFAFTG 
TNDAAPVSPI VTTVAGEGES GPTMELGVAR SDTILQQSAP PAGFALRSIS CTGMAAGGTA 
TYDLALRRVT LNAAATDYGA NIACTFTNTR VVVTVSKLGE GGTDSFSFTG SNGFAAQSIT 
TSAANVPEEG DPSGLTTVGA ATTITEGVPP AGWKLKGIAC TGMGAGGTAT VNLTSRSVTL 
NAAATAAGSN IACTFTNTKL PTMTVSKVSI GGTDSFAFTG TNGFTATNVT TEDDGVAIAA 
AEQVLTAANT ATSITESVPP VPYALTGISC TGMGPGGSAT PNLATRTIAL NAAATAPGSE 
INCTFTNTVQ PQLKLVKTAG AASFAVGVPS SYTLTLNNIG PVPTSAPATI SDTVPATLTL 
GTMPAGCSAS GQVVSCTVPA GLAATSGAAA FVIPVTPLPG ASPSVANTAT ATGGGDPSCT 
ATGNCISSVT TPVLGEPRIT LRKTKTNIAG THTFGFTLTG VTNPTDSIAV TALATPQAST 
TVHVGTPGVE ASVQESGVPA GWPANPVSVS CLDSAAATSG NPATQLAILN GNTATLPASV 
MRPAAAIACT FTNTATARVA VNKTASATAG AGGSITYGLS FANTGPVATG TSLVVSEQLP 
PGVVANSVVP GTGVTSVSCG TLPSAPGALL NCTMTLPAGG IPATTGVRGF TLNATAPIVD 
TGTVLTNYAS TNVSGAGLPV TAAGAGCFSS GAVSCANAQT TIVVGPAAGG QSGVRIVTDN 
QLANGTAQDV LEAFIRDASG NAVQAGTVVS FGATPNVAFN GGAVGAAGSC TTTAAGLCQV 
RATSTVAAVY STTQVTVGGA VLSGNFSVGE DSYLPSPQPY RFGSRPTVTI RKTSLGGVGT 
FSFTGSNGLV ARNITTTVAG TPVATAVQTL TAANIATTIT EGAPPAGYAL IDASCTGLGA 
GGSASRNGRV LTLDAAATAP GSNIVCTFTN SLDTGTPPPP VAPTVMCSTN AAVFNTGFDG 
PVGPPVATGR DPVWESGIGT ATGGPASVAA WARSYVGNKA PASWIASPFG NANWVSQYPG 
SHTGNVDIYH RFTFNMAPSV NPATFALKLD FYSDNSVAAI YVNGVLQSVP GVPQAPTNPY 
FYAGFVAGAA ATTNLVSNWQ TGSNTVIVHI KSGAGAQGFL AQATTSALCA PATINLQKTT 
LNGAGGPFGF NLTNTTQASG TVSTLAVGTP AQVDGNTAAA GVQAFSASVS NKVISITEPA 
VPGWHLTGAS CTDAGVPVGS LGTGASGRTY TIPAASVQLG KSLQCVFTNS ASATVTIRKV 
SLGATGTFGF SGNNGLAPQS LTTTALGTPV AGAIQTVAVP STATIIAEDP LPTDYALTGV 
SCTGLGAGGT ATPDLPNRKV TLDAAATAPG SNIACTFTNT YTPPYPRVQI VKTTIGGTGS 
NLFRFALSGL STASDSITVV GDDTVEGAAN ITGTASAGVT ISETSPEGWP ASPVSASCVD 
LNSATPAATF GTLTGNQLAI PGANMVAGAA ITCTFVNGYP KNVTGRVFLD NGTGGGTAND 
GLINGGEVGQ SGISMRLTDC AATTLSTAVT DGSGKYALAV PFTIGTGDAL CVEETNTVSR 
MSTGASLGAV QLPSGQTVAN AGTGYTYTRD GTPDRIAFTW NSSGHAGLNF GDVERNTLAA 
DGAKNGLPGS TVSYPHTFTA RTGGEVSFDI PNAVDTPAIS GWSGKIFADT GCTGALQAGA 
ALLYPPAVPV TVATGQNVCI VMQEFIPANA MSGNNNTSTV QASFVYTNAG PGLNATYTVT 
DITTVSTSAL ELKKEVRNVT RGGSFGINNQ AKPGETLEYR IAYTNNGTTP ISGLTVNDTT 
PQFTAFIAAQ ADTTPATLAS CQKNTPANPA PAPAVDCSAA QAEGGTGALS WKFAGPLDPG 
ASGTVLFTVK VN