| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5929 |
|---|
| Symbol | |
|---|
| ID | 7974968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 632629 |
|---|
| End bp | 633645 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644796494 |
|---|
| Product | amidohydrolase 2 |
|---|
| Protein accession | YP_002947768 |
|---|
| Protein GI | 239820583 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2159] Predicted metal-dependent hydrolase of the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.901897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAAGA TCGACAGCTA TGCACACATC CTGCCGAAGG CCTACTTCGA CAGGATGGCC
GAGATCGCCA AGGATCAAGG CGCGATCAAG CGATGGCTGA CCATTCCGGT CCTCCATGAC
CTCGACGCGC GGCTGAAGAT GATGGAGGAC TTTCCTGGCT ATCAGCAAGT CCTGACGCTT
TCCAATCCTC CCATCGAGCT GATCGCCGGA CCGCAGACCT CGCCCGAGAT GGCGCGCCTG
GCGAACGACG AGATGGCAAA GATCCGCGAT GCGCATCCGG ACAAGTTCCC CGCGTTTGTC
GCATCCCTTC CCATGAACAA CGTGCCGGCA GCGCTCGAGG AGATGGAGCG CGCCATCGCG
GTCCTCGGCG CACGCGGCAT CCAGGTATTC ACCAACGTCA ATGGACGGCC GCTGGACGAT
CCGGAGTTCT GGCCCATCTT CGAGGCGGCC AGCAAGACGT ACGACGTTCC GGTGTGGATG
CATCCGGCCC GCGGCGCGTC CATGCCGGAC TATGCGAGCG AAGAGAAGTC GAAGTACGAG
ATCTGGTGGA CCTTCGGTTG GCCCTATGAA ACGAGCGCGG CGATGTCGCG CATGGTTTTC
TCGGGCTTCT TCGAACGCCT TCCAGAGCTG AAAGTCATCA CGCACCACAT GGGCGCCATG
ATTCCGTACT TCGACGGACG CGTCGGCCCG GGACTCGACC AGTTCGGCTC CCGGACATCG
GGCGAAGACT ACGAGGGGCT GCTCAAGCGC ATGAAGAAGC GCCCCATCGA TTTTTTCAAG
ATGTTCTATG TCGACACGGC GTTGGCAGGC GGCAAGTCGG GGATTCGTTG CGGATTGGAC
TTCTTCGATC CGAAGCAGGT GGTCTTTGCA ACCGATTGCC CCTTCGATCC GGAAGGGGGA
CCGATGTTCC TGAGGACCAT CCCCCAGGCG ATCGACGAAC TGGATCTTCC ACAGGACGTA
CAGGATGGCA TCTATTTCGG CAACGCCCTT CGCTTGCTGA AGATGAATTG CTGTTGA
|
|---|
| Protein sequence | MRKIDSYAHI LPKAYFDRMA EIAKDQGAIK RWLTIPVLHD LDARLKMMED FPGYQQVLTL
SNPPIELIAG PQTSPEMARL ANDEMAKIRD AHPDKFPAFV ASLPMNNVPA ALEEMERAIA
VLGARGIQVF TNVNGRPLDD PEFWPIFEAA SKTYDVPVWM HPARGASMPD YASEEKSKYE
IWWTFGWPYE TSAAMSRMVF SGFFERLPEL KVITHHMGAM IPYFDGRVGP GLDQFGSRTS
GEDYEGLLKR MKKRPIDFFK MFYVDTALAG GKSGIRCGLD FFDPKQVVFA TDCPFDPEGG
PMFLRTIPQA IDELDLPQDV QDGIYFGNAL RLLKMNCC
|
|---|
| |