| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5917 |
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| Symbol | |
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| ID | 7974956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 621834 |
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| End bp | 623171 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796485 |
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| Product | HipA N-terminal domain protein |
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| Protein accession | YP_002947759 |
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| Protein GI | 239820574 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.902916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCCGTC GGTCACACAG CCAGTCCCTC GGCCTCTGGT CCAACGGTGA ACGCGTCGGC
CGCTGGACAA TCCCTGCCCG CGGCGACATG GAGCTTCACT ACGACGACGC CTGGGTTCGA
TCGGACGTCG GTCGCCCGCT TTCCCTGTCC CTGCCCTTCA ACCCGCACAA CGAGCCCATC
AAGGGCGCCG CCGTCGAACA CTACTTCGAC AACCTGTTGC CCGAGAGCAA TGCCATTCGC
AAGCGCGTGG CGGCGCGCTT CAAGACCGGC TCGGTAGACG CCTTCCCTCT TCTGCGCGCT
ATCGGGCGCG ACTGCGTGGG CGCCGTTCAG CTTCTCGACG AGGCCCAGAC ACCCACGGCC
ACCGATCAGG TGGAAGCGGT GCAGGTCGAT GACGAGTCCA TCGAGCGGCA CCTGCTGAGC
GTCGTCAGTC CCGACAAGTT CGGCGCTTCT GAGGACCCGG ACGACGACTT CCGCATTTCC
CTGGCCGGCG CGCAGGAAAA GGATGCCTAT CTGTGGTGGA ACGGCGCCTG GCACAAGCCG
CGGGGCGCCA CCCCCACCAC GCACATTTTC AAGCTCCCGT TGGGCCTGAT CGGCGGCGTC
CGGGCCGACT TCTCCACCTC GGTGGACAAC GAGTGGCTGT GCTTGAAGCT GCTACACGCC
TACGGGCTCT CCACGGCAGA CGCCACCATC ACCTCGTTCG GGAAACAGCG CGTCCTCGTC
GTCGAACGCT TTGACAGGCG CATTTCGAAC GGCCGCCTCC TGCGGCTGCC CCAGGAAGAC
TTCTGCCAGG CGACGGGGAC GTCGCCGCTC ATGAAGTACG AGAGCGAAGG CGGACCCGGC
CTGCGCAAGC TCTTTGCACT GCTGCAGCAG TCCGCGACCG CGGCGGATGA CATGCGCACC
TTGATGGCCT CGCAGGTCCT GTTCTGGCTG CTGCGCGCGC CGGATGGACA TGCGAAGAAC
TTCAGCATTC ATCTGCTGGC CGGCGGCGGC TTCCGGCTGA CGAAGATGTA TGACGTGATG
TCGGCCTATC CCATCCTCGG CAAGGGCCCC AACCAGTGGG CGCCACGCGA GGTCAAGATG
GCCATGGCGC TTCTCGGGAA GAGCAAGCAC TACACCATGG CCGCCATCCA GCGCCGGCAC
TTCAACAGCA CCGCCCGACA GGTAGGCTAT GCGCACGACG CCGAAGCCAT CATCCAGCAG
CTGATTGAAC GCACGCCCCG CGCAATCAGC GAAGTGCAGG CGCAGTTGCC GAAGGATTTC
TCGCCATGGG TCGCCGAGCG TGTGCTGGGC GGGCTGCAGG CCGCGGTGGA CACGCTTGAA
GGGATGCCAT CCAACTGA
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| Protein sequence | MGRRSHSQSL GLWSNGERVG RWTIPARGDM ELHYDDAWVR SDVGRPLSLS LPFNPHNEPI
KGAAVEHYFD NLLPESNAIR KRVAARFKTG SVDAFPLLRA IGRDCVGAVQ LLDEAQTPTA
TDQVEAVQVD DESIERHLLS VVSPDKFGAS EDPDDDFRIS LAGAQEKDAY LWWNGAWHKP
RGATPTTHIF KLPLGLIGGV RADFSTSVDN EWLCLKLLHA YGLSTADATI TSFGKQRVLV
VERFDRRISN GRLLRLPQED FCQATGTSPL MKYESEGGPG LRKLFALLQQ SATAADDMRT
LMASQVLFWL LRAPDGHAKN FSIHLLAGGG FRLTKMYDVM SAYPILGKGP NQWAPREVKM
AMALLGKSKH YTMAAIQRRH FNSTARQVGY AHDAEAIIQQ LIERTPRAIS EVQAQLPKDF
SPWVAERVLG GLQAAVDTLE GMPSN
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