| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5912 |
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| Symbol | |
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| ID | 7974951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 619109 |
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| End bp | 620341 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796483 |
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| Product | HipA domain protein |
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| Protein accession | YP_002947757 |
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| Protein GI | 239820572 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCCCTG AAAAGATTCG TCTCCTGAAT GTCTCGATCG GGGACGCTGC CCAGGCGGGC
CAGTTGCTCC GGACCTCCAC CTACGAGTTT CGGTATCTGG CGCCGGACGC GGAGCAGGCG
ACGGTGGCCC TGCTGATGCC GCCCAGCGAG CGCCTCACCT GGCAAGACGG GGACCTGTTT
CCCCCGATGG ACCAGAATCT TCCCGAGGGC GACCTGTTCA TGAGGATCCG GGAGCTGTTC
CCGAAACAGC CGATGACGCC GATGCACATG CTGGCGCTGG TCGGGCGCAA CGGGATTGGG
CGGCTGGGCT ACAGCCTGGC CGACCAGGTT GCACCCTCCT TGCCTCGCAC GCTGAGCAAG
GCCGAACTGC TGGGCACGAA GTACACGCCG GAGGTTTTCA GTGAGTTGGT GGCGGCCTAC
TTGAGCACGG GGGCGGGCAT TGCGGGCATG CAGCCCAAAA TCATGGTGCC GGACCGATCG
ACGGTGCCCA TCCCATCGCT CATTGTCAAG GCGGCAAGTG CGGCCTACCC CGGGCTGGCT
GCCAACGAGT ATCTGTGCCT GACGGCCGCC AAACGTGCAG GCATCGATGT GCCGTCGTTC
GCATTGTCCG ACGATGGTCA GATGCTGGTC TTGGACCGCT TTGACCTGGT CGTCCATGAC
GATGGTCGGG TCGAGCGGCT CGGCTTTGAA GACATCGCGG CGCTGGCGGG GCTGCGGGTG
CGCGACATCT TGTCGGACCG CAAATACCAT GGCAGCTACC AGCGTGTCGC CGAGTTGCTG
CGCCAGTTCC AGCTTCACAG CAGCAACCTG CATCGATTCT TCGAGCAGGT GGCCTTCTCC
ATCATGGTCC GCAACGGCGA TGCGCACCTC AAGAACTTCG GATTGCTCTA CCGCTCGCGC
CAGGACGTGT GGTTGGCGCC CATGTTCGAT GTGGTGACAA CCTCCATCTA CAGGTACACC
CAGTCCCCGG GCGGCCCTGA GCTCGAAGAC CGGACACTTG CGCTCAAGTT GTTCGCGGGT
AAACACCAGA CGAAAGCCTA TCCGACAACC GAAGAACTGG TGGATTTCGG CCGCCGCATC
TGTGGTGTCG CCCAGCCCGT CGAAGTGATT GACCGGATAG CGGCTGCCAT GGGCAAGACC
CTGGACGAGG CCAGAGGCGA CGCGCGTGTC ACCAGGGCGC TATGGGAGCA GATGGCGCGA
GCCTGGGAAG AGGGCCGCGC GCACGCGCGA TGA
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| Protein sequence | MLPEKIRLLN VSIGDAAQAG QLLRTSTYEF RYLAPDAEQA TVALLMPPSE RLTWQDGDLF
PPMDQNLPEG DLFMRIRELF PKQPMTPMHM LALVGRNGIG RLGYSLADQV APSLPRTLSK
AELLGTKYTP EVFSELVAAY LSTGAGIAGM QPKIMVPDRS TVPIPSLIVK AASAAYPGLA
ANEYLCLTAA KRAGIDVPSF ALSDDGQMLV LDRFDLVVHD DGRVERLGFE DIAALAGLRV
RDILSDRKYH GSYQRVAELL RQFQLHSSNL HRFFEQVAFS IMVRNGDAHL KNFGLLYRSR
QDVWLAPMFD VVTTSIYRYT QSPGGPELED RTLALKLFAG KHQTKAYPTT EELVDFGRRI
CGVAQPVEVI DRIAAAMGKT LDEARGDARV TRALWEQMAR AWEEGRAHAR
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