| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5908 |
|---|
| Symbol | |
|---|
| ID | 7974947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 616449 |
|---|
| End bp | 616715 |
|---|
| Gene Length | 267 bp |
|---|
| Protein Length | 88 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644796481 |
|---|
| Product | helix-turn-helix domain protein |
|---|
| Protein accession | YP_002947755 |
|---|
| Protein GI | 239820570 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.84632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA CAATCTACAG CCGGGAAAGT CGGCTCGTTC TCAAGCTGTT AAAAGAATTC
AGAGTGGCGC GGGGTCTGAC GCAGGCGGAA CTCGCCAAGA GGACCAAGAT GCTCCAGAGC
GATGTTTCCA AGGTCGAAAC AGGCATTCGG CGAGTCGACT TCGTCGAGCT TCGACATTGG
CTGATCGCGT TGGACTTGGA CTTGGCCACA TTCGTGGCCG AGTTTGAAGC GCGGCTCCCT
GAGGTCGCTT CGGTTCGAAA AAGCTAA
|
|---|
| Protein sequence | MQKTIYSRES RLVLKLLKEF RVARGLTQAE LAKRTKMLQS DVSKVETGIR RVDFVELRHW
LIALDLDLAT FVAEFEARLP EVASVRKS
|
|---|
| |