| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5888 |
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| Symbol | |
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| ID | 7975939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 599995 |
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| End bp | 600801 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796464 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_002947738 |
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| Protein GI | 239820553 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAA CCAGATGGAG ACGACTTCTG ATCACCGGCG CTGCCGGCAG GCTGGGCAGC
CACTTGCGCA GCGACCTGCG AGACTTGGCC GAGCACGTGC GTGCCACCGA CCTGCGCGCG
CTCCCGCCGG CCACCGAGGG CGAAGAAGTG GTGCAGGCCG ACCTGTCGGA CATGGCCGCC
GTGCACGCGC TGCTCGAGGG TGTCGATGCA GTGGTCCACC TGGGTGCCGT CATGCCGCAG
GCGCCGTGGG AGGCTGTGCT GCAGGCCAAC ATCATCGGCA GCTTCAACGT GTTCGAGGCG
GCCCGGCAGG CCGGCGCCAA GCGCATCGTG TTCGCCAGCT CGCACCATGC GATCGGCATG
TACGACCGCT CGCAGCCGCT TGATTCCGGT GCGCCGCCGC GCCCGGGCAA CCTCTACGGC
CTCAGTAAGG CGTTCGGCGA GAACCTGGCG CGCATGTACC ACGACAAGCA TGGCATCGAA
GTGGCGTGTC TGCGCATCGG CTCATGCTTC GAGCAGCCGA CTGACGAGCG CATGCTGTCC
ACCTGGCTCA GCCATGCGGA CATGGTGCAG CTGTGCCGCC GCTGCCTGGT CGCGCCTGCC
GTTGGCTACA GCGTGGTGTA TGGCGTATCG GCCAACAGCC GCAGCTGGTG GAGCAATGAC
AAGGTCGACT TCCTGGGCTT CGCGCCGCAA GACAGCGCCG ATGCCTACGC ACAGGACATC
GCGCACGCCG GTGTACCCGC CTCGGCGCCG TTGAGCGCGC GCGCGGCGCA CCTGCAAGGC
GGGCGCTTCA CCGACCTCAT TCCTTAG
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| Protein sequence | MTTTRWRRLL ITGAAGRLGS HLRSDLRDLA EHVRATDLRA LPPATEGEEV VQADLSDMAA
VHALLEGVDA VVHLGAVMPQ APWEAVLQAN IIGSFNVFEA ARQAGAKRIV FASSHHAIGM
YDRSQPLDSG APPRPGNLYG LSKAFGENLA RMYHDKHGIE VACLRIGSCF EQPTDERMLS
TWLSHADMVQ LCRRCLVAPA VGYSVVYGVS ANSRSWWSND KVDFLGFAPQ DSADAYAQDI
AHAGVPASAP LSARAAHLQG GRFTDLIP
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