| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5877 |
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| Symbol | |
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| ID | 7975928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 588032 |
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| End bp | 589300 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796453 |
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| Product | L-carnitine dehydratase/bile acid-inducible protein F |
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| Protein accession | YP_002947727 |
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| Protein GI | 239820542 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCAG CTTCCGCCGC TGAAAGCACA GCCCCTTCCA CATCCAACCG CAGCGGTCCG
TTGTCGCACC TGCGGGTGCT GGACCTCAGC CGCATCCTCG CGGCGCCCTG GGCCGGTCAG
ATCCTGGCCG ACCTGGGCGC CGAGGTCATC AAGGTCGAGC GTCCCGGCGC CGGCGACGAC
ACCCGTTCGT GGGGGCCGCC CTTCCTGAAG GACGCCAGCG GCCAGGACAC CTGCGAAGCC
GGCTACTACT TGGCGGTCAA CCGCGGTAAG CGTTCCATCA CCGTCAGCAT CGACACGTCC
GAAGGCCAGC AGATCGTGCG CGACATGGCA GCGCAGGCAG ACATCGTGCT GGAGAACTAC
AAGGCCGGCA CACTGGAGCG CTATGGTTTG GACCAAGCCA GCCTGCGCAA GATCAACCCG
CGTCTGATCT ATTGCTCGGT CACCGGCTTC GGCCAGACCG GCCCGCGCCG CGACCAACCC
GCTTACGACT TCCTGATCCA GGCCATGGGT GGCCTGATGA GCGTCACCGG CGAGCGGGAC
GGCCGCCCTG GCGGCGGGCC GCAGAAGGTG GGTGTGCCCA TCGTGGACCT AATGACCGGC
ATGTACACCG CGGTGTCGGT GTTGGCGGCG GTGGCGCGGC GCAACCAGAC CGGAACTGGC
GACACCATCG ACATCGGCAT GCTCGACGTG CAGGTGGCCA CGTTGGCCAA CCAAGCGATG
AATTTCCTGG TGTCGGGCAA GACGCCTCAG CGCAACGGCA ACGCTCATCC GAACATCCAG
CCGCAGGACG TGTTCGCCTG CGCCGACGGC GACATGATCC TGGTGGTAGG CAACGACGGC
CAGTTCGCCA AGCTGGCCGA CGTACTGGGC CACGGCGAAT GGGCGCAGGA CGAGCGCTTT
CGCACCAATG CCCAGCGCGT GCGAAACAGT GGCGAACTGT CGGCCTTGCT GCGCCAGGCC
TTCGGTGCAC GCCAGCGTGC CGAAGTCATC GCAGCGCTGG ACGCGGCCGG CGTGCCCAGC
GGCGCCATCA ACAGCGTGTC TGAGGTCTTC GACGAGCCGC AGGTGCAGGC CCGCGGCATG
CTCATGAAAC TGCCGCACCC GGCCGGCGTG GACGTGCCGC AGGTGGCCAG CCCAATGCGC
TTTGCCGATG CCCCCATCCA ATACCGCCGC CCGCCGCCGC TGCTGGGTGA GCACTCGCAC
GAGGTGCTGC GCGAACTGGG CTACGACGAT GAGCGCATTG CGGCCTTGCG CAGCGCGGGC
GTTATCTGA
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| Protein sequence | MSAASAAEST APSTSNRSGP LSHLRVLDLS RILAAPWAGQ ILADLGAEVI KVERPGAGDD
TRSWGPPFLK DASGQDTCEA GYYLAVNRGK RSITVSIDTS EGQQIVRDMA AQADIVLENY
KAGTLERYGL DQASLRKINP RLIYCSVTGF GQTGPRRDQP AYDFLIQAMG GLMSVTGERD
GRPGGGPQKV GVPIVDLMTG MYTAVSVLAA VARRNQTGTG DTIDIGMLDV QVATLANQAM
NFLVSGKTPQ RNGNAHPNIQ PQDVFACADG DMILVVGNDG QFAKLADVLG HGEWAQDERF
RTNAQRVRNS GELSALLRQA FGARQRAEVI AALDAAGVPS GAINSVSEVF DEPQVQARGM
LMKLPHPAGV DVPQVASPMR FADAPIQYRR PPPLLGEHSH EVLRELGYDD ERIAALRSAG
VI
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