Gene Vapar_5875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5875 
Symbol 
ID7975926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp585880 
End bp586536 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content58% 
IMG OID644796451 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002947725 
Protein GI239820540 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCAA TTAAACCTAT TCGAATGCGA AGCAGCGGGG TTGTCAGTAG TCAGCTTGCA 
AATGCATTGG CAGCTCCAGA AGTTGCAATC AAACCCCGAA TCCTGAACGC TGCTGTCGAG 
CTGCTGATTG AGCAAGGCAC GGCTCGCACC ACCACCTTGG CGGTCCAGCG ACGCGCAGGT 
GTAAGCCGCG GCGCCCTACT CCATCACTTT CCAACTCATG CGGAGTTGCT GTCTTCGACG 
GTGCAGGAAC TTGTCCGAAG AAACGAAGCA GCAGTCCACG AGGCGCTTGC CAAAGTCGGT 
GTTGCTGAAG ATCCATTCGA GAGGGCGGTG AAGGTGCTGG CCACCACGAT GGCAAAACCG 
GCCTATCTCG CCGAACTGGA ACTGTGGGCG ATTTCCCGTA CGGACATCGA ACTTCGCACC 
GCCCTTCAGG CTGCAGAGCG CGGCGCACGC AAAGAGAGTG ACCGAGTGAT GCGGATGCTG 
TTTCCCTCCA TAGCAGAACG CCCTGACGCC GCTGAGGTAA TGGGATCGAC ACTCGCCTTT 
TTGCGGGGAC AGGCGGTGAC CGGAATCATC AGCGGAAGGC CATCTCAGCG ACAGAAGCAG 
ATGACCACCT GGCTGAGAGC GATTCGGATC ATGTTGGACG ATACCTCCAC CACCTGA
 
Protein sequence
MEAIKPIRMR SSGVVSSQLA NALAAPEVAI KPRILNAAVE LLIEQGTART TTLAVQRRAG 
VSRGALLHHF PTHAELLSST VQELVRRNEA AVHEALAKVG VAEDPFERAV KVLATTMAKP 
AYLAELELWA ISRTDIELRT ALQAAERGAR KESDRVMRML FPSIAERPDA AEVMGSTLAF 
LRGQAVTGII SGRPSQRQKQ MTTWLRAIRI MLDDTSTT