Gene Vapar_5874 details

Gene Information

• Locus tag: Vapar_5874
• ID: 7975925
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 583195
• End bp: 585279
• Gene Length: 2085 bp
• Protein Length: 694 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644796450
• Product: 3-hydroxyacyl-CoA dehydrogenase NAD-binding
• Protein accession: YP_002947724
• Protein GI: 239820539
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1250] 3-hydroxyacyl-CoA dehydrogenase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGACTC TTCAGTACGA CCTCGACACC GGCACTGGCG TTGTCACACT GACCTTCGAC 
GATCTCGATG CCTCTGTCAA TACTTTCAAC GATGCTTGGC GGACCGACAT GCAAGCCGCG 
CTCGATCGCA TGAGCGAAGG GGGCAGCCGG CCACGCGGTG TCATCCTCGC TTCCGCCAAG 
GACACGTTCT TTGCCGGCGC CAACTTGAAG GACGTGCTTG CGCAGTGGCC CGCCGATCCC 
GCGCAGGTGT TTGCGCGCAC CGAGGCGGGC AAGAAGCTGC TGCGCCGACT GGAAACCTTG 
GGCTGTCCGG TGGTGGCGTG CATTGCCGGC AGCGCACTGG GCGGCGGCTT CGAGCTCGCA 
CTGTGCGCGC ACCACCGCGT GGTTGTCGAC GATGCCAGAG TGCAACTCGG CTTTCCGGAG 
GTTGGCCTCG GCCTGATTCC CGCGGGGGGA GGCGTGACCA AACTCGTGCG TCTGCTAGGG 
CTCGAGTCCG CCATGCCGTA CATCCTGGAG AGCCGAGTGA TGAGTCCGAG CGCAGCACGA 
GATGCTGGTC TCGTACACGC CGTGGTGCCG TCCGGTCTCG GCGCCGCCGC AGCGCTGCGC 
GAGGCTGCAT TGGCGTGGAT CGAGGCCCAT CCACAGGCGC AGCAGCCTTG GGAGGTCAAG 
GGACACCGCA TCCCCGGCGG CGCGCCGGGC TGTCCGAAGC TGGCACCGCT GCAGATGCTG 
GCGCCGGCGA TGCTTTTCCA AAAGACGAGG GGGAGATACC CAGCCGCTGA AGCGGCCTTG 
AGTTGCATGG TGGAAGGGGC GCAATTGGAT GTGGACACCG CGCTGCGGCT GGAAACGCGA 
GCGCTCGTCG GCCTGCTGAC ACACCCTGTC ACGCGCAACC TGATCCAACT CTTCTTCGAC 
CGCAATGCCG TCAGGCGGGG GCGGTCACGC CCACAGGGTG TCGCGCCGTG GCAAGCGGGC 
AAGGTAAGCA TCCTGGGGGC GGGCATGATG GGGGCCGGGA TCGCGCAGGT CTGTGCAGCG 
CACAGTCTGA ACGTGGTGTT GAAGGATGTG AGCATCGAAT TTGCCGAGGC CGGCAAGGAG 
CGTGTCCGCC GTCTGACCGA TCAGCGTGTG CATGCGGGGC GCATGACGCC GTCTCAGCAG 
GCTGCGATTC TGGAGCGCAT CGAGCCCGCC GCCGAGGTGT CGGCGTTGGA CGGCAGCGAC 
CTCATTATCG AGACGGTGTT CGAGGATCGC GCGCTCAAAG GCCGCGCGAC CGGCGAAGCC 
GAGCCGTGCC TGCGTCCAGA CGGCGTCTTC GCGAGCAACA CGTCGACCCT GCCCATCACC 
GGGCTAGCCG AAGCGGTCAG CATGCCCGAG CGCTTCATCG GCCTGCACTT CTTTTCACCT 
GCCGACAGGA TGGAGCTCGT GGAGATCGTC GTTGCCGAGA AGACCAGTGC CGAGACGTTA 
GCCAGGGCCT ACGACTTCGT GCTGCAGATC GGCAAGACAC CAATCGTGGT GCGTGACGCC 
CGCGGCTTCT TTACCAGCCG AACCGTCGGC TCCTACATGG CTGAAGGTGC GCAGATGCTG 
GCCGAGGGCA TTCCGGCGAC GGTGGTGGAA CTGGCCGGCC GTGACGCCGG CATGCCGGTG 
GGTCCGCTGA CCGTGGCGGA CGAGATTTCG CTGGTCACGC TGGCGAAAAT TATGGAGCAG 
AACGCCAGTG ATGCGTTGGA CGTGGGCGAG CGCTTCATGA TTGCGCTATG CAGGCAACAC 
GGTCGCAAGG GACGCGTTCT TGGGGGCGGT TACTACGACT ATACCGAGGA CGCACCTAAG 
ACACTCTGGC CGGGCTTGAA AGCGTTTGAG CGCCCCGAAA CGTCGTGGAC GCTCGCTGCA 
TTGAGCGAGC GCCTACTAAT GCGTCAGGCT GTCGAGGCGT TGCGCTGCGA GGCCGAAGGC 
GTGGTGACGC ATGCACATGA CGCCAATGTC GGCTCGGTCT TGGGCTTCGG ATTCCCCGCA 
TGGACAGGTG GCGTACTCCA ATACGTCGCA GCAATGGGCC GGGACAGGTT CATGGCGCAA 
GCCCATGCGC TTGCTGCAGC TCATGGTGGG CGATTCACGC CGTGA 

 

Protein sequence

MKTLQYDLDT GTGVVTLTFD DLDASVNTFN DAWRTDMQAA LDRMSEGGSR PRGVILASAK 
DTFFAGANLK DVLAQWPADP AQVFARTEAG KKLLRRLETL GCPVVACIAG SALGGGFELA 
LCAHHRVVVD DARVQLGFPE VGLGLIPAGG GVTKLVRLLG LESAMPYILE SRVMSPSAAR 
DAGLVHAVVP SGLGAAAALR EAALAWIEAH PQAQQPWEVK GHRIPGGAPG CPKLAPLQML 
APAMLFQKTR GRYPAAEAAL SCMVEGAQLD VDTALRLETR ALVGLLTHPV TRNLIQLFFD 
RNAVRRGRSR PQGVAPWQAG KVSILGAGMM GAGIAQVCAA HSLNVVLKDV SIEFAEAGKE 
RVRRLTDQRV HAGRMTPSQQ AAILERIEPA AEVSALDGSD LIIETVFEDR ALKGRATGEA 
EPCLRPDGVF ASNTSTLPIT GLAEAVSMPE RFIGLHFFSP ADRMELVEIV VAEKTSAETL 
ARAYDFVLQI GKTPIVVRDA RGFFTSRTVG SYMAEGAQML AEGIPATVVE LAGRDAGMPV 
GPLTVADEIS LVTLAKIMEQ NASDALDVGE RFMIALCRQH GRKGRVLGGG YYDYTEDAPK 
TLWPGLKAFE RPETSWTLAA LSERLLMRQA VEALRCEAEG VVTHAHDANV GSVLGFGFPA 
WTGGVLQYVA AMGRDRFMAQ AHALAAAHGG RFTP