Gene Vapar_5873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5873 
Symbol 
ID7975924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp581984 
End bp583189 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content65% 
IMG OID644796449 
Productacetyl-CoA acetyltransferase 
Protein accessionYP_002947723 
Protein GI239820538 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGAGG CCTTTGTTTA CGACGCCGTT CGCACTCCGC GCGGCAAGGG CAAGACCGAC 
GGCTCGCTGC ACGAGGTCAA GCCGATCACA CTAGCTGTCG GATTGCTGCG GGCCTTGCAG
CAGCGCACCA GCCTGGACAC GGCTCGCGTG GACGATGTGG TCATGGGCAT CGTGACACCC
GTAGGAGACC AGGGGGGCTG TCTGCCGAAG ATCGCGGCGC TTGCGGCGGG CTGGGACTGG
AACGCCAGTG GCATCCAGAT CAACCGCTTC TGCGCTTCCG GCCTGGATGC CATCAACCAA
GCCGCGCAGC GCGTGCGCTC GGGATGGGAT GACTTGATCG TCGCGGGAGG CATCGAAAGC
ATGAGTCGGG TGCCCATGGG CAGCGATGGA ACAGCGTGGG CGCTGGACCC GCGCACGAGC
ATCGACAACG CTTTTGTGCC GCAAGGTATC TCCGCCGACC TTATTGCATC GACTGAGGGA
TTCACCCGTG AGGACGTGGA TGCCTATGCA CTTGCTTCGC AGCAACGCGC CGCAAGGGCG
CTGGCCGAAG GACGCTTCGC ACGCAGCGTC GTACCCATTC GCGATGGCAA CGGCTTGATG
ATCCTGGACC ACGATGAATT CGTGCGGCCT GACAGCACGA TGGCTGGCTT GGCGGCGCTC
AAGCCTTCGT TCGAGCAGGC CGGCCATATG GGCTTCGACG CCGTCGCGCT GCGCCGCTAT
CCGCAGCTCG ACCGCGTCCG GCACGTACAC ACCCCAGGGA ACAGTTCGGG CGTCGTGGAT
GGCGCCGCTG CGGTGTTGGT CGGCAATGAG CGTGTGGGCG CTGCGCTGGG ATGGACGCCG
CGCGCGCGCG TCGTGGCAGT TGCGCTCACC GGCAGTGAAC CGACCCTCAT GTTGACCGGT
CCGGTGCCAG CCGCGCGCAA AGCGCTGCAG CGCGCCGGCC TCACGGTCGA CCAGATCGAC
CTGTTCGAAG TCAACGAGGC GTTTGCGAGC GTACCCCTGC ATTTCATGAA GCACATGAAG
GTGCCGCACG AGAAGGTCAA CGTCAACGGT GGTGCGATCG CATTGGGGCA CCCGCTGGGC
GCTACCGGCG CGATCCTCGT CACCACACTG TTAGATGAGC TGGAACGGCG CCAGCTGCGC
TATGGACTGG TCACGCTGTG CGTCGGCGCC GGCATGGGCA TCGCCTCCAT CTTCGAACGG
ATCTGA
 
Protein sequence
MNEAFVYDAV RTPRGKGKTD GSLHEVKPIT LAVGLLRALQ QRTSLDTARV DDVVMGIVTP 
VGDQGGCLPK IAALAAGWDW NASGIQINRF CASGLDAINQ AAQRVRSGWD DLIVAGGIES
MSRVPMGSDG TAWALDPRTS IDNAFVPQGI SADLIASTEG FTREDVDAYA LASQQRAARA
LAEGRFARSV VPIRDGNGLM ILDHDEFVRP DSTMAGLAAL KPSFEQAGHM GFDAVALRRY
PQLDRVRHVH TPGNSSGVVD GAAAVLVGNE RVGAALGWTP RARVVAVALT GSEPTLMLTG
PVPAARKALQ RAGLTVDQID LFEVNEAFAS VPLHFMKHMK VPHEKVNVNG GAIALGHPLG
ATGAILVTTL LDELERRQLR YGLVTLCVGA GMGIASIFER I