| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5844 |
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| Symbol | |
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| ID | 7975895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 558304 |
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| End bp | 558984 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796423 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002947697 |
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| Protein GI | 239820512 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGACA TCACCCTTCT GTGGTCCGTG CTGCCCGCGC TGGTCGAGGG CGCCGGGCTC
ACGCTCGCAC TCACGGCCTG GGTCATCCTC CTGGGCACGG CCCTGTCGAT CCCCGTTGCC
CTCGGCCGGA ACGCGCGGGC CGCCGGTCTG CGCGCGGCGG CCCATGCCTA CGTGCTCTTC
TTTCGCGGGA CCCCCGCGCT GGTCCAGCTG TTCCTGCTCT ACTACGGGGC CGGCCAGTTC
GACCTGATCC GGCATTCCGT GCTCTGGCCC GTGCTGCGCG ATCCCTACTG GTGCGTGGTG
ATCGCCCTGG GACTGAACTC GGCCGCCTAC ACGGGCAAGA CACTGGGCGC CGCACTGGCC
GCGATCCCGC GGGGGACGCG CGAGGCCGCC CGCGTCCTGG GGCTCGGCCG CGCCCAGGCC
TTCGGCCTGA TCGACCTGCC GCTCGCGGTG CGCGCGGCGC TGCCGGCCTT CGGCAACGAG
ATCATCCTGA CCTGCAAGGC GACCTCGCTC GCCAGCACCG TCACCCTGCT CGAGCTCACG
GGCAGCGCCC GCCTGCTCAC CGCCGAGACC TACGCGCCTT ACGAGATCTT TCTCGGCGCG
GGCCTCGTCT ATCTCGCCAT CAACTACGTC CTGCTGCGCG GCGTGCGCGC GCTCGAGGCC
TCGTTGCATC GTCCCCACTG A
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| Protein sequence | MFDITLLWSV LPALVEGAGL TLALTAWVIL LGTALSIPVA LGRNARAAGL RAAAHAYVLF
FRGTPALVQL FLLYYGAGQF DLIRHSVLWP VLRDPYWCVV IALGLNSAAY TGKTLGAALA
AIPRGTREAA RVLGLGRAQA FGLIDLPLAV RAALPAFGNE IILTCKATSL ASTVTLLELT
GSARLLTAET YAPYEIFLGA GLVYLAINYV LLRGVRALEA SLHRPH
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