| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5843 |
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| Symbol | |
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| ID | 7975894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 557628 |
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| End bp | 558299 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796422 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002947696 |
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| Protein GI | 239820511 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4215] ABC-type arginine transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATCC TCCATGGTTT TGGCGGGCAG CTGCTCCTGG GCGCGCTCGC GACGCTGCAG
CTCGCGGCCG CCGCGTTGCT GCTCGGCACG CTGTTCGGCG CCGCCGTCTG CGGCCTGCAG
CTCTCGGGCC ACCGCGTTCT GCGGGCCGCC GGCAACGGCT ACGCCGCGGT GGTCCGGGGC
ATTCCCGACC TGCTGATCGT CTTCGCCGTC TTCTTTGGCG GCTCGCTCAC GCTCGCCGCG
CTCACCGGCC GCTATGTCGA GATCGATACC TTCCTCGCCG GCGTGGCCGC GCTGGCGCTC
TCGTTCGGCG CCTATGCCGC CGAGATCGCG CGGGGCGCGC TGCTGGCGGT CCCGAAAACC
CAGCGGGAGG CCGCGAGGAC GCTCGGACTG TCGCGCGCCC AGGCGCTGTG GACCGTCGTG
CTGCCGCAGG CGGCCCGCTT CGCCCTCGCC CCGTTCGGCA ACCAGTCGAT CGTTCTGCTC
AAGCAGACCT CGATCGTCTC CATCGTCGGG TGCGACGAAC TCATGCGCAA GGCCGCGGAG
GCCTCCGGCG CGACGCGCGA GCCGTTCACG ATGTACCTCG CCGCCGCCTG CATCTATCTT
GCGCTGACCG GCTTCGCCAC GCTGTGCCTC GAGTGGGCGG AGCGCCGAGC CGCCCGCCCG
CTGGCCGCCT GA
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| Protein sequence | MNILHGFGGQ LLLGALATLQ LAAAALLLGT LFGAAVCGLQ LSGHRVLRAA GNGYAAVVRG
IPDLLIVFAV FFGGSLTLAA LTGRYVEIDT FLAGVAALAL SFGAYAAEIA RGALLAVPKT
QREAARTLGL SRAQALWTVV LPQAARFALA PFGNQSIVLL KQTSIVSIVG CDELMRKAAE
ASGATREPFT MYLAAACIYL ALTGFATLCL EWAERRAARP LAA
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