| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5842 |
|---|
| Symbol | |
|---|
| ID | 7975893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 556827 |
|---|
| End bp | 557612 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644796421 |
|---|
| Product | extracellular solute-binding protein family 3 |
|---|
| Protein accession | YP_002947695 |
|---|
| Protein GI | 239820510 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.742895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTCC ACGCTTCGCT TCCCGGCTTG CTTCGCCGGC CCCTCTGCCT GGCGCTCTTG
TCATGCCTCT GCATGGCCGC AGCCAACGCC GAGGGCAGCT ACCGCATCGC GACCGAAGGC
GCGTACCCGC CCTGGAGCTT CAAGGACTCG CAGGGGATGC TGCAGGGCTG GGACGTCGAC
ATCGCACGTG CACTGTGCGA GAAGATGAAG GCCAAGTGCG AGATCGTCGC GCAGGACTGG
GATGGCATCA TTCCGGGCCT CGTCGCCCGC AAGTACGACA TGATCGTGGC GAGCATGGCG
ATCACGCCGC AACGCCGCGA GCGCGTGGCC TTCTCGGCCA AGTACAAGGA CACGATTTCG
CGCTTCGTCG CGCGCAAGGG AATGCCGCCG GACGTCAGCC CCGCGGCACT GAAAGGCAAG
AGCATCGGGG TACAGCGCGG CTCGGTCCAG GCGGCCTACC TCGCGCAGAA CTACCAGGCC
GCGAATCTCA AGTTCTACGA CACGCCGCAG GCCGCCGAAC TCGATCTCGT CGCCGGCCGC
GTCGAGTACA TCCTCGGCAA CATGGTCACC TACCATGTCG GCTTCCTGAA GACGCCCGAG
GCCAAGGACT TCGCGTTCGT CGGCCCGGAG CTCAAGGGCG GCATCCTCGG CGAAGGCAAC
GGCATCGCCG TGCGCAAGGA CGATGGGCAG ACCCTGGCGA GGATCAACGC CGCGCTGGAA
GCGATCCGGG CCGACGGCAC CTACGACCGC ATCACGGCGA AGTACTTCCC GTTCAAGCTG
ATGTAG
|
|---|
| Protein sequence | MRFHASLPGL LRRPLCLALL SCLCMAAANA EGSYRIATEG AYPPWSFKDS QGMLQGWDVD
IARALCEKMK AKCEIVAQDW DGIIPGLVAR KYDMIVASMA ITPQRRERVA FSAKYKDTIS
RFVARKGMPP DVSPAALKGK SIGVQRGSVQ AAYLAQNYQA ANLKFYDTPQ AAELDLVAGR
VEYILGNMVT YHVGFLKTPE AKDFAFVGPE LKGGILGEGN GIAVRKDDGQ TLARINAALE
AIRADGTYDR ITAKYFPFKL M
|
|---|
| |