| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5821 |
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| Symbol | |
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| ID | 7975872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 526344 |
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| End bp | 527681 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796402 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_002947676 |
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| Protein GI | 239820491 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTGGA TGAGCGAGCC CCGCCGCGTG TCCCGGACCG ATCCCCAGGA GCATGGCGAC
GCGCCCGAGA TCGACCAGAA CACCGGGGAG ATCCTGTCAG CGCAGCGAGC CGCAGCTCCG
GGAGACGGGG CGTTCCAGGC AGCCGACGAG CGCCCGACGA TCCATGGCGA GCGGGCCATT
CCATCGGTCA ATCGCGAGCG CTCCATCCAG TCGCGCATCA GCGGGTTCCT GGCACTGACG
GCGATCATGC TGCTGGGCGC CGGATTCCTG TTCTGGTACT ACAACACCCG GTATGCCAAG
ACCCAGGAGG CCGAAGAGGC TGCGAGAAAG GCGGCGGCTG CGCGCGCCGG CGGCGAGATG
AAGGTTCCGC CGCTCGGCCG CATCAATCCG CCCAGAGCGG CGCCGGAAGC AGCAGCGACC
GCCGCTCCGC CCTCCCCGCC GCCACCGCCG GCGAACAGCG CCAACACGGG ACCGCCGCAG
AAGACACCCG AGCAGATCGC ACTGGAACGA CAGCTGGGCG CCCCGGTGCT TCGGCGCGCC
CAAGCCGCTC AGGCGCGCAG CGCCACCACG CCGCACGCGC TCGCGGATCC GGCGATGCTG
CCTGCCGGCG GCGTGCCAAG CATGGCCCAG CTGATCGGTG CGCTGCAGCC ACCCCACGCC
AGTTTGGCGG CACCCGGCGG CGGTCAGCTC GCCGCCAGCC TTCGGCCCAC GCCGACGCCG
GCGGTGGTCG CCCAGACCCT GCCGACACGG CGCATGCTTT TGCCCAAGGG CGCGTTCATC
GACTGCACGC TGGAAACCGC CATCGATTCC ACCTATGAGG GCATGACCAC CTGCATCGGC
GCGAGCGACG TTTACGGGGC CGACGGCAAG GTCGTGCTGC TGGAGCGTGG CACCAAGTAC
GTCGGCGAAC AGCGTGGAAC GCCGCGACAG GGACAGGGTC GCGTCTTCAT CGTCTGGAAC
GAAGCGCGCA CGCCGACCGG CGTCGTGGTC CAGCTGGCGT CCCCGGGCAC CGACGAATTG
GGGCGCAGCG GCCTCCCCGG CTTCGTCGAC ACCCATTTCT GGGATCGCTT CGGTGCCGCG
GTCCTGATCT CGGTGATCGA CGGCACGATG CAGACGATCG CCGCCCACGA GCAAAGCGGC
ACGTCTGTCG GTAGCGGCGG CGGCGTGGTG CTCGCTCCCC AGGGCAGCCG CGACGTCATC
ACGGAGGTGC TGCGCAGCAC CGTGTCGATT CCGCCGACCG TGATCAAGAA CCAGGGCGAG
CGGATCCAGA TCCTGGTCGC CCGCGATGTG GATTTCAGGA GCGTCTATGC GCTTCGAACC
GAACCGGCCA TCCCTTGA
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| Protein sequence | MTWMSEPRRV SRTDPQEHGD APEIDQNTGE ILSAQRAAAP GDGAFQAADE RPTIHGERAI
PSVNRERSIQ SRISGFLALT AIMLLGAGFL FWYYNTRYAK TQEAEEAARK AAAARAGGEM
KVPPLGRINP PRAAPEAAAT AAPPSPPPPP ANSANTGPPQ KTPEQIALER QLGAPVLRRA
QAAQARSATT PHALADPAML PAGGVPSMAQ LIGALQPPHA SLAAPGGGQL AASLRPTPTP
AVVAQTLPTR RMLLPKGAFI DCTLETAIDS TYEGMTTCIG ASDVYGADGK VVLLERGTKY
VGEQRGTPRQ GQGRVFIVWN EARTPTGVVV QLASPGTDEL GRSGLPGFVD THFWDRFGAA
VLISVIDGTM QTIAAHEQSG TSVGSGGGVV LAPQGSRDVI TEVLRSTVSI PPTVIKNQGE
RIQILVARDV DFRSVYALRT EPAIP
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