Gene Vapar_5808 details

Gene Information

• Locus tag: Vapar_5808
• ID: 7974929
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 514156
• End bp: 514818
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644796389
• Product: Acyl-homoserine-lactone synthase
• Protein accession: YP_002947663
• Protein GI: 239820478
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism; [T] Signal transduction mechanisms
• COG ID: [COG3916] N-acyl-L-homoserine lactone synthetase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.167675
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGATCA TTGCGGGAAC GATCGATACT TTCTCGGCGG ACGTGCTGTT CGACATGGCA 
CGCTACCGGC ACGAGATTTT CGTCGAGAAA CTGGGCTGGA AGCTCCATAC GCGCGGCCGG 
CTGGAACTCG ACGAATTCGA CCGGAAGGAC ACTGTCTATC TGATCGCACG CAATCCGGAC 
GGCGAGATCA TCGGCACGAG CCGCCTGTTG CCCACGCACC GGCCCTATCT TCTGGCCAGC 
CTCTTCCCGC AGCTGCTCGG CGACACGCCG GCCCCGTGCT CGCCCGATAT CTGGGAACTG 
TCGCGATTCG CCGCCGGCGA CGGCACGCGG CTCGGGATCG GCGGGGATCC GCATGGATGG 
TCGCTCGCGC TGGACATGCT GAGCGCGGCG ATGCGGACTG TCGCCAAGGA GGGCGGACGA 
CGGCTCATCA GCGCCTCGCC CCTGGGCATC GAGCGCATCC TGCGCCGCAC GGGCCTGTCC 
GCGTACCGAG CGGCACCGCC GATGCGGGTC GACGGCCAGC TTCTGTTCGC CTGCCTCATC 
GACGTGGACA AGAACTGGTG CCCGCACCGG GACCGCCACG CCGATGGGAT CGGCCGAGTC 
GCCCGCCGGC CTGCGGGCAA AGGGGCCGCT GCCACCCGTT CAGTTCAGGA GCCCGAGACG 
TGA 

 

Protein sequence

MEIIAGTIDT FSADVLFDMA RYRHEIFVEK LGWKLHTRGR LELDEFDRKD TVYLIARNPD 
GEIIGTSRLL PTHRPYLLAS LFPQLLGDTP APCSPDIWEL SRFAAGDGTR LGIGGDPHGW 
SLALDMLSAA MRTVAKEGGR RLISASPLGI ERILRRTGLS AYRAAPPMRV DGQLLFACLI 
DVDKNWCPHR DRHADGIGRV ARRPAGKGAA ATRSVQEPET